AIMC Topic: Synthetic Biology

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Intelligent Design of Terminators by Coupling Prediction and Generation Models.

ACS synthetic biology
Terminators are specific nucleotide sequences located at the 3' end of a gene and contain transcription termination information. As a fundamental genetic regulatory element, terminators play a crucial role in the design of gene circuits. Accurately c...

CELLM: Bridging Natural Language Processing and Synthetic Genetic Circuit Design with AI.

ACS synthetic biology
The complexity of the genetic circuit design limits accessibility and efficiency in synthetic biology. This study presents an integrated system that combines Cello software with large language models (DeepSeek-R1, Phi-4) and the LangChain framework i...

Synthetic biology meets diagnostics: Engineering biosensing platforms for rapid and accurate pathogen and viral detection.

Biosensors & bioelectronics
The integration of synthetic biology with biosensor technologies has catalyzed a paradigm shift in the development of programmable, field-deployable diagnostic systems for precision detection of pathogens and viral threats. This review provides a com...

Challenges and Opportunities in Smart Biosensing for Biomanufacturing.

ACS synthetic biology
Traditional metabolic engineering has largely focused on the direct construction of synthetic metabolic pathways, often overlooking the critical role of regulation. In contrast, natural metabolic pathways are inherently tightly regulated, enabling ro...

Recent advances of muconic acid production using microbial synthetic biology.

Archives of microbiology
Muconic acid is a high-value intermediate with unique properties. Traditional methods for muconic acid production showed some disadvantages including expensive raw materials, environmentally sensitive, and high concentration of heavy metal catalysts....

Data-driven synthetic microbes for sustainable future.

NPJ systems biology and applications
The escalating global environmental crisis demands transformative biotechnological solutions that are both sustainable and scalable. This perspective advocates Data-Driven Synthetic Microbes (DDSM); engineered microorganisms designed through integrat...

Computational Strategies to Enhance Vitamin B Biosynthesis Potential of Microbes.

Current microbiology
Vitamin B is a vital nutrient for the normal functioning of many metabolic processes. It has a characteristic corrinoid ring structure with a cobalt ion. Its complex chemical structure demands 30 enzyme-catalyzed steps for synthesis. Deficiency of th...

Abstraction hierarchy to define biofoundry workflows and operations for interoperable synthetic biology research and applications.

Nature communications
Lack of standardization in biofoundries limits the scalability and efficiency of synthetic biology research. Here, we propose an abstraction hierarchy that organizes biofoundry activities into four interoperable levels: Project, Service/Capability, W...

Optimizing phage therapy with artificial intelligence: a perspective.

Frontiers in cellular and infection microbiology
Phage therapy is emerging as a promising strategy against the growing threat of antimicrobial resistance, yet phage and bacteria are incredibly diverse and idiosyncratic in their interactions with one another. Clinical applications of phage therapy o...

Engineered Bacteria Convert a 3-Bit Binary Code to a 3-Bit Gray Code by Multicellular Artificial-Neural-Network-Type Architecture.

ACS synthetic biology
The neuromorphic computing with genetically engineered cells is still in its infancy and shows great promise to solve various complex computational problems. The success of such computing is dependent on the expansion of its capability to build new a...