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Threonine

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Using support vector machines to identify protein phosphorylation sites in viruses.

Journal of molecular graphics & modelling
Phosphorylation of viral proteins plays important roles in enhancing replication and inhibition of normal host-cell functions. Given its importance in biology, a unique opportunity has arisen to identify viral protein phosphorylation sites. However, ...

Broiler responses to digestible threonine at different ages: a neural networks approach.

Journal of animal physiology and animal nutrition
Three experiments were conducted with broiler chickens to evaluate the effects of digestible threonine (DThr) and crude protein (CP) on their performance at three different phases of age: 1-14, 15-28 and 29-42 days. The measured traits included the f...

iMulti-HumPhos: a multi-label classifier for identifying human phosphorylated proteins using multiple kernel learning based support vector machines.

Molecular bioSystems
Protein phosphorylation plays a potential role in regulating protein conformation and functions. As a result, identifying an uncharacterized protein sequence as a phosphorylated protein is a very meaningful problem and an urgent issue for both basic ...

Boosting phosphorylation site prediction with sequence feature-based machine learning.

Proteins
Protein phosphorylation is one of the essential posttranslation modifications playing a vital role in the regulation of many fundamental cellular processes. We propose a LightGBM-based computational approach that uses evolutionary, geometric, sequenc...

A deep learning based approach for prediction of Chlamydomonas reinhardtii phosphorylation sites.

Scientific reports
Protein phosphorylation, which is one of the most important post-translational modifications (PTMs), is involved in regulating myriad cellular processes. Herein, we present a novel deep learning based approach for organism-specific protein phosphoryl...

DeepPhoPred: Accurate Deep Learning Model to Predict Microbial Phosphorylation.

Proteins
Phosphorylation is a substantial posttranslational modification of proteins that refers to adding a phosphate group to the amino acid side chain after translation process in the ribosome. It is vital to coordinate cellular functions, such as regulati...

DOGpred: A Novel Deep Learning Framework for Accurate Identification of Human O-linked Threonine Glycosylation Sites.

Journal of molecular biology
O-linked glycosylation is a crucial post-translational modification that regulates protein function and biological processes. Dysregulation of this process is associated with various diseases, underscoring the need to accurately identify O-linked gly...