Database : the journal of biological databases and curation
May 22, 2025
The paper describes our biomedical relation extraction system, which is designed to participate in the BioCreative VIII challenge Track 1: BioRED Track, which emphasizes the relation extraction from biomedical literature. Our system employs an ensemb...
Database : the journal of biological databases and curation
Mar 21, 2025
Ontologies are widely used in databases to standardize data, improving data quality, integration, and ease of comparison. Within ontologies tailored to diverse use cases, post-composing user-defined terms reconciles the demands for standardization on...
Database : the journal of biological databases and curation
Mar 19, 2025
Federated learning is an upcoming machine learning paradigm which allows data from multiple sources to be used for training of classifiers without the data leaving the source it originally resides. This can be highly valuable for use cases such as me...
Database : the journal of biological databases and curation
Feb 19, 2025
Enzymes, serving as eco-friendly catalysts, are progressively supplanting traditional chemical catalysts in light industry sectors such as feed, papermaking, textiles, detergents, leather, and sugar production. Despite this advancement, the variabili...
Database : the journal of biological databases and curation
Feb 17, 2025
Curated resources at centralized repositories provide high-value service to users by enhancing data veracity. Curation, however, comes with a cost, as it requires dedicated time and effort from personnel with deep domain knowledge. In this paper, we ...
Database : the journal of biological databases and curation
Jan 22, 2025
Ontologies and knowledge graphs (KGs) are general-purpose computable representations of some domain, such as human anatomy, and are frequently a crucial part of modern information systems. Most of these structures change over time, incorporating new ...
Database : the journal of biological databases and curation
Dec 19, 2024
Biomedical Relation Extraction (RE) is central to Biomedical Natural Language Processing and is crucial for various downstream applications. Existing RE challenges in the field of biology have primarily focused on intra-sentential analysis. However, ...
Database : the journal of biological databases and curation
Dec 5, 2024
Atherosclerotic cerebrovascular disease could result in a great number of deaths and disabilities. However, it did not acquire enough attention. Less information, statistics, or data on the disease has been revealed. Thus, no systematic concept datas...
Database : the journal of biological databases and curation
Nov 28, 2024
There is an ongoing need for scalable tools to aid researchers in both retrospective and prospective standardization of discrete entity types-such as disease names, cell types, or chemicals-that are used in metadata associated with biomedical data. W...
Database : the journal of biological databases and curation
Sep 27, 2024
Advanced omics technologies and facilities generate a wealth of valuable data daily; however, the data often lack the essential metadata required for researchers to find, curate, and search them effectively. The lack of metadata poses a significant c...