AIMC Topic: Biological Ontologies

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MRIO: the Magnetic Resonance Imaging Acquisition and Analysis Ontology.

Neuroinformatics
Magnetic resonance imaging of the brain is a useful tool in both the clinic and research settings, aiding in the diagnosis and treatments of neurological disease and expanding our knowledge of the brain. However, there are many challenges inherent in...

Ontological representation, modeling, and analysis of parasite vaccines.

Journal of biomedical semantics
BACKGROUND: Pathogenic parasites are responsible for multiple diseases, such as malaria and Chagas disease, in humans and livestock. Traditionally, pathogenic parasites have been largely an evasive topic for vaccine design, with most successful vacci...

Bayesian-knowledge driven ontologies: A framework for fusion of semantic knowledge under uncertainty and incompleteness.

PloS one
The modeling of uncertain information is an open problem in ontology research and is a theoretical obstacle to creating a truly semantic web. Currently, ontologies often do not model uncertainty, so stochastic subject matter must either be normalized...

Developing an ontology of non-pharmacological treatment for emotional and mood disturbances in dementia.

Scientific reports
Emotional and mood disturbances are common in people with dementia. Non-pharmacological interventions are beneficial for managing these disturbances. However, effectively applying these interventions, particularly in the person-centred approach, is a...

Development and application of Chinese medical ontology for diabetes mellitus.

BMC medical informatics and decision making
OBJECTIVE: To develop a Chinese Diabetes Mellitus Ontology (CDMO) and explore methods for constructing high-quality Chinese biomedical ontologies.

Coordinating virus research: The Virus Infectious Disease Ontology.

PloS one
The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies-structured, controlled, vocabularies-are designed...

Usability and Recall Evaluation of Virtual Reality Ontology Object Manipulation (VROOM) System.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Biomedical ontologies are repositories of knowledge that encapsulate biomedical terms and the relationships between them. When visualized, ontologies are complex graphs, where each node represents one biomedical concept, and links express binary rela...

Automatic Mapping of Terminology Items with Transformers.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Biomedical ontologies are a key component in many systems for the analysis of textual clinical data. They are employed to organize information about a certain domain relying on a hierarchy of different classes. Each class maps a concept to items in a...

The PACIFIC ontology for heterogeneous data management in cardiology.

Journal of biomedical informatics
With the emergence of health data warehouses and major initiatives to collect and analyze multi-modal and multisource data, data organization becomes central. In the PACIFIC-PRESERVED (PhenomApping, ClassIFication, and Innovation for Cardiac Dysfunct...