AIMC Topic: Biological Ontologies

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Developing an ontology of non-pharmacological treatment for emotional and mood disturbances in dementia.

Scientific reports
Emotional and mood disturbances are common in people with dementia. Non-pharmacological interventions are beneficial for managing these disturbances. However, effectively applying these interventions, particularly in the person-centred approach, is a...

Development and application of Chinese medical ontology for diabetes mellitus.

BMC medical informatics and decision making
OBJECTIVE: To develop a Chinese Diabetes Mellitus Ontology (CDMO) and explore methods for constructing high-quality Chinese biomedical ontologies.

Coordinating virus research: The Virus Infectious Disease Ontology.

PloS one
The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies-structured, controlled, vocabularies-are designed...

Usability and Recall Evaluation of Virtual Reality Ontology Object Manipulation (VROOM) System.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Biomedical ontologies are repositories of knowledge that encapsulate biomedical terms and the relationships between them. When visualized, ontologies are complex graphs, where each node represents one biomedical concept, and links express binary rela...

Automatic Mapping of Terminology Items with Transformers.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Biomedical ontologies are a key component in many systems for the analysis of textual clinical data. They are employed to organize information about a certain domain relying on a hierarchy of different classes. Each class maps a concept to items in a...

The PACIFIC ontology for heterogeneous data management in cardiology.

Journal of biomedical informatics
With the emergence of health data warehouses and major initiatives to collect and analyze multi-modal and multisource data, data organization becomes central. In the PACIFIC-PRESERVED (PhenomApping, ClassIFication, and Innovation for Cardiac Dysfunct...

The use of foundational ontologies in biomedical research.

Journal of biomedical semantics
BACKGROUND: The FAIR principles recommend the use of controlled vocabularies, such as ontologies, to define data and metadata concepts. Ontologies are currently modelled following different approaches, sometimes describing conflicting definitions of ...

Strategy maintenance in smart healthcare systems.

BMC medical informatics and decision making
BACKGROUNDS: The size of medical strategies is expected to grow in conjunction with the expansion of modern diseases' complexity. When a strategy includes more than ten statements, its manual management becomes very challenging, and in some cases, im...

Patient safety classifications, taxonomies and ontologies, part 2: A systematic review on content coverage.

Journal of biomedical informatics
BACKGROUND: Content coverage of patient safety ontology and classification systems should be evaluated to provide a guide for users to select appropriate ones for specific applications. In this review, we identified and compare content coverage of pa...

The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease.

Med (New York, N.Y.)
BACKGROUND: Navigating the clinical literature to determine the optimal clinical management for rare diseases presents significant challenges. We introduce the Medical Action Ontology (MAxO), an ontology specifically designed to organize medical proc...