AIMC Topic: Computer Simulation

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Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach.

Bioinformatics (Oxford, England)
MOTIVATION: In silico drug target prediction provides valuable information for drug repurposing, understanding of side effects as well as expansion of the druggable genome. In particular, discovery of actionable drug targets is critical to developing...

DeepCLIP: predicting the effect of mutations on protein-RNA binding with deep learning.

Nucleic acids research
Nucleotide variants can cause functional changes by altering protein-RNA binding in various ways that are not easy to predict. This can affect processes such as splicing, nuclear shuttling, and stability of the transcript. Therefore, correct modeling...

Designing an optimal inventory management model for the blood supply chain: Synthesis of reusable simulation and neural network.

Medicine
Blood supply managers in the blood supply chain have always sought to create enough reserves to increase access to different blood products and reduce the mortality rate resulting from expired blood. Managers' adequate and timely response to their cu...

mRNALoc: a novel machine-learning based in-silico tool to predict mRNA subcellular localization.

Nucleic acids research
Recent evidences suggest that the localization of mRNAs near the subcellular compartment of the translated proteins is a more robust cellular tool, which optimizes protein expression, post-transcriptionally. Retention of mRNA in the nucleus can regul...

Generating sequential electronic health records using dual adversarial autoencoder.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Recent studies on electronic health records (EHRs) started to learn deep generative models and synthesize a huge amount of realistic records, in order to address significant privacy issues surrounding the EHR. However, most of them only fo...

Using Machine Learning to Estimate Unobserved COVID-19 Infections in North America.

The Journal of bone and joint surgery. American volume
BACKGROUND: The detection of coronavirus disease 2019 (COVID-19) cases remains a huge challenge. As of April 22, 2020, the COVID-19 pandemic continues to take its toll, with >2.6 million confirmed infections and >183,000 deaths. Dire projections are ...

Dr. Agent: Clinical predictive model via mimicked second opinions.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Prediction of disease phenotypes and their outcomes is a difficult task. In practice, patients routinely seek second opinions from multiple clinical experts for complex disease diagnosis. Our objective is to mimic such a practice of seekin...

[Application of convolutional neural network to risk evaluation of positive circumferential resection margin of rectal cancer by magnetic resonance imaging].

Zhonghua wei chang wai ke za zhi = Chinese journal of gastrointestinal surgery
To explore the feasibility of using faster regional convolutional neural network (Faster R-CNN) to evaluate the status of circumferential resection margin (CRM) of rectal cancer in the magnetic resonance imaging (MRI). This study was registered in ...

Field performance of sterile male mosquitoes released from an uncrewed aerial vehicle.

Science robotics
Genetic control methods of mosquito vectors of malaria, dengue, yellow fever, and Zika are becoming increasingly popular due to the limitations of other techniques such as the use of insecticides. The sterile insect technique is an effective genetic ...