AIMC Topic: Data Mining

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A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network.

Journal of cardiovascular translational research
Identifying populations of heart failure (HF) patients is paramount to research efforts aimed at developing strategies to effectively reduce the burden of this disease. The use of electronic medical record (EMR) data for this purpose is challenging g...

Semi-supervised Learning for the BioNLP Gene Regulation Network.

BMC bioinformatics
BACKGROUND: The BioNLP Gene Regulation Task has attracted a diverse collection of submissions showcasing state-of-the-art systems. However, a principal challenge remains in obtaining a significant amount of recall. We argue that this is an important ...

Extracting biomedical events from pairs of text entities.

BMC bioinformatics
BACKGROUND: Huge amounts of electronic biomedical documents, such as molecular biology reports or genomic papers are generated daily. Nowadays, these documents are mainly available in the form of unstructured free texts, which require heavy processin...

The contribution of co-reference resolution to supervised relation detection between bacteria and biotopes entities.

BMC bioinformatics
BACKGROUND: The acquisition of knowledge about relations between bacteria and their locations (habitats and geographical locations) in short texts about bacteria, as defined in the BioNLP-ST 2013 Bacteria Biotope task, depends on the detection of co-...

A literature-driven method to calculate similarities among diseases.

Computer methods and programs in biomedicine
BACKGROUND: "Our lives are connected by a thousand invisible threads and along these sympathetic fibers, our actions run as causes and return to us as results". It is Herman Melville's famous quote describing connections among human lives. To paraphr...

Pairwise Constraint-Guided Sparse Learning for Feature Selection.

IEEE transactions on cybernetics
Feature selection aims to identify the most informative features for a compact and accurate data representation. As typical supervised feature selection methods, Lasso and its variants using L1-norm-based regularization terms have received much atten...

Prediction of hydrogen and carbon chemical shifts from RNA using database mining and support vector regression.

Journal of biomolecular NMR
The Biological Magnetic Resonance Data Bank (BMRB) contains NMR chemical shift depositions for over 200 RNAs and RNA-containing complexes. We have analyzed the (1)H NMR and (13)C chemical shifts reported for non-exchangeable protons of 187 of these R...

NLP based congestive heart failure case finding: A prospective analysis on statewide electronic medical records.

International journal of medical informatics
BACKGROUND: In order to proactively manage congestive heart failure (CHF) patients, an effective CHF case finding algorithm is required to process both structured and unstructured electronic medical records (EMR) to allow complementary and cost-effic...

On the creation of a clinical gold standard corpus in Spanish: Mining adverse drug reactions.

Journal of biomedical informatics
The advances achieved in Natural Language Processing make it possible to automatically mine information from electronically created documents. Many Natural Language Processing methods that extract information from texts make use of annotated corpora,...