AIMC Topic: Data Mining

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TGIN: Document-level event extraction with two-phase graph inference network.

Neural networks : the official journal of the International Neural Network Society
Document-level event extraction aims to extract event records from a whole document that contain numerous entities scattered across multiple sentences. Efficiently modeling the interactions among these entities is crucial. However, previous methods s...

AlpaPICO: Extraction of PICO frames from clinical trial documents using LLMs.

Methods (San Diego, Calif.)
In recent years, there has been a surge in the publication of clinical trial reports, making it challenging to conduct systematic reviews. Automatically extracting Population, Intervention, Comparator, and Outcome (PICO) from clinical trial studies c...

Language model based on deep learning network for biomedical named entity recognition.

Methods (San Diego, Calif.)
Biomedical Named Entity Recognition (BioNER) is one of the most basic tasks in biomedical text mining, which aims to automatically identify and classify biomedical entities in text. Recently, deep learning-based methods have been applied to Biomedica...

SubGE-DDI: A new prediction model for drug-drug interaction established through biomedical texts and drug-pairs knowledge subgraph enhancement.

PLoS computational biology
Biomedical texts provide important data for investigating drug-drug interactions (DDIs) in the field of pharmacovigilance. Although researchers have attempted to investigate DDIs from biomedical texts and predict unknown DDIs, the lack of accurate ma...

Natural language processing (NLP) to facilitate abstract review in medical research: the application of BioBERT to exploring the 20-year use of NLP in medical research.

Systematic reviews
BACKGROUND: Abstract review is a time and labor-consuming step in the systematic and scoping literature review in medicine. Text mining methods, typically natural language processing (NLP), may efficiently replace manual abstract screening. This stud...

Text mining of hypertension researches in the west Asia region: a 12-year trend analysis.

Renal failure
More than half of the world population lives in Asia and hypertension (HTN) is the most prevalent risk factor found in Asia. There are numerous articles published about HTN in Eastern Mediterranean Region (EMRO) and artificial intelligence (AI) metho...

A multimodal approach using fundus images and text meta-data in a machine learning classifier with embeddings to predict years with self-reported diabetes - An exploratory analysis.

Primary care diabetes
AIMS: Machine learning models can use image and text data to predict the number of years since diabetes diagnosis; such model can be applied to new patients to predict, approximately, how long the new patient may have lived with diabetes unknowingly....

Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.

Journal of biomedical informatics
OBJECTIVE: To develop a natural language processing (NLP) package to extract social determinants of health (SDoH) from clinical narratives, examine the bias among race and gender groups, test the generalizability of extracting SDoH for different dise...

Pipelined biomedical event extraction rivaling joint learning.

Methods (San Diego, Calif.)
Biomedical event extraction is an information extraction task to obtain events from biomedical text, whose targets include the type, the trigger, and the respective arguments involved in an event. Traditional biomedical event extraction usually adopt...

Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction.

Journal of biomedical informatics
OBJECTIVE: To develop soft prompt-based learning architecture for large language models (LLMs), examine prompt-tuning using frozen/unfrozen LLMs, and assess their abilities in transfer learning and few-shot learning.