AIMC Topic: DNA Barcoding, Taxonomic

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The apportionment of dietary diversity in wildlife.

Proceedings of the National Academy of Sciences of the United States of America Jul 14, 2025
Evaluating species' roles in food webs is critical for advancing ecological theories on competition, coexistence, and biodiversity but is complicated by pronounced dietary variability within species and overlap across species. We combined dietary DNA...
Animals Diet DNA Barcoding, Taxonomic Food Chain Herbivory Ecosystem Animals, Wild Biodiversity
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Machine learning-based mapping of Acidobacteriota and Planctomycetota using 16 S rRNA gene metabarcoding data across soils in Russia.

Scientific reports Jul 3, 2025
The soil microbiome plays a crucial role in maintaining healthy ecosystems and supporting sustainable agriculture. Studying its biogeographical structure and distribution is essential for understanding the rates and mechanisms of microbially mediated...
Acidobacteria Microbiota DNA Barcoding, Taxonomic Russia Machine Learning Soil Ecosystem Soil Microbiology RNA, Ribosomal, 16S
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Illuminating Entomological Dark Matter with DNA Barcodes in an Era of Insect Decline, Deep Learning, and Genomics.

Annual review of entomology Dec 19, 2024
Most insects encountered in the field are initially entomological dark matter in that they cannot be identified to species while alive. This explains the enduring quest for efficient ways to identify collected specimens. Morphological tools came firs...
Animals DNA Barcoding, Taxonomic Deep Learning Biodiversity Genomics Entomology Insecta
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Integrating external stressors in supervised machine learning algorithm achieves high accuracy to predict multi-species biological integrity index of aquaculture wastewater.

Journal of hazardous materials Oct 30, 2024
Monitoring and predicting the environmental impact of wastewater is essential for sustainable aquaculture. The environmental DNA metabarcoding-integrated supervised machine learning (SML) algorithm is an alternative method for ecological quality asse...
Wastewater Algorithms Supervised Machine Learning DNA Barcoding, Taxonomic Animals Environmental Monitoring Aquaculture
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Development of a two-layer machine learning model for the forensic application of legal and illegal poppy classification based on sequence data.

Forensic science international. Genetics May 22, 2024
Poppies are beneficial plants with a variety of applications, including medicinal, edible, ornamental, and industrial purposes. Some Papaver species are forensically significant plants because they contain opium, a narcotic substance. Internationally...
Papaver DNA, Plant Forensic Genetics Machine Learning Sequence Analysis, DNA Genetic Markers DNA Barcoding, Taxonomic
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New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data.

Molecular ecology resources Sep 13, 2023
Environmental DNA (eDNA) metabarcoding provides an efficient approach for documenting biodiversity patterns in marine and terrestrial ecosystems. The complexity of these data prevents current methods from extracting and analyzing all the relevant eco...
DNA Barcoding, Taxonomic DNA, Environmental Deep Learning Environmental Monitoring Biodiversity Ecosystem
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Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks.

Proceedings of the National Academy of Sciences of the United States of America Aug 26, 2022
Taxonomic classification, that is, the assignment to biological clades with shared ancestry, is a common task in genetics, mainly based on a genome similarity search of large genome databases. The classification quality depends heavily on the databas...
Genome Algorithms Deep Learning Genomics Software DNA DNA Barcoding, Taxonomic Base Sequence
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DeepBarcoding: Deep Learning for Species Classification Using DNA Barcoding.

IEEE/ACM transactions on computational biology and bioinformatics Aug 8, 2022
DNA barcodes with short sequence fragments are used for species identification. Because of advances in sequencing technologies, DNA barcodes have gradually been emphasized. DNA sequences from different organisms are easily and rapidly acquired. There...
DNA Neural Networks, Computer DNA Barcoding, Taxonomic Deep Learning Sequence Analysis, DNA
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DiversityScanner: Robotic handling of small invertebrates with machine learning methods.

Molecular ecology resources Dec 23, 2021
Invertebrate biodiversity remains poorly understood although it comprises much of the terrestrial animal biomass, most species and supplies many ecosystem services. The main obstacle is specimen-rich samples obtained with quantitative sampling techni...
Ecosystem Robotics Robotic Surgical Procedures Biodiversity DNA Barcoding, Taxonomic Invertebrates Humans Machine Learning Animals
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Domain-Scan: Combinatorial Sero-Diagnosis of Infectious Diseases Using Machine Learning.

Frontiers in immunology Feb 10, 2021
The presence of pathogen-specific antibodies in an individual's blood-sample is used as an indication of previous exposure and infection to that specific pathogen (e.g., virus or bacterium). Measurement of the diagnostic antibodies is routinely achie...
HIV Envelope Protein gp160 Base Sequence Hepatitis C Antigens Polymerase Chain Reaction AIDS Serodiagnosis Peptide Fragments Hepatitis C Antibodies Antigen-Antibody Reactions Epitopes High-Throughput Nucleotide Sequencing DNA, Recombinant Amino Acid Sequence HIV Core Protein p24 DNA Barcoding, Taxonomic Oligonucleotides Genetic Vectors Communicable Diseases Humans Hepatitis C HIV Antibodies HIV Infections Machine Learning Serologic Tests Peptide Library
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