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Epistasis, Genetic

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Epistasis analysis using artificial intelligence.

Methods in molecular biology (Clifton, N.J.)
Here we introduce artificial intelligence (AI) methodology for detecting and characterizing epistasis in genetic association studies. The ultimate goal of our AI strategy is to analyze genome-wide genetics data as a human would using sources of exper...

Epistasis analysis using multifactor dimensionality reduction.

Methods in molecular biology (Clifton, N.J.)
Here we introduce the multifactor dimensionality reduction (MDR) methodology and software package for detecting and characterizing epistasis in genetic association studies. We provide a general overview of the method and then highlight some of the ke...

The limitations of simple gene set enrichment analysis assuming gene independence.

Statistical methods in medical research
Since its first publication in 2003, the Gene Set Enrichment Analysis method, based on the Kolmogorov-Smirnov statistic, has been heavily used, modified, and also questioned. Recently a simplified approach using a one-sample t-test score to assess en...