AIMC Topic: Genomics

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Applications for Deep Learning in Epilepsy Genetic Research.

International journal of molecular sciences
Epilepsy is a group of brain disorders characterised by an enduring predisposition to generate unprovoked seizures. Fuelled by advances in sequencing technologies and computational approaches, more than 900 genes have now been implicated in epilepsy....

Exploring and validating the prognostic value of pathomics signatures and genomics in patients with cutaneous melanoma based on bioinformatics and deep learning.

Medical physics
BACKGROUND: Cutaneous melanoma (CM) is the most common malignant tumor of the skin. Our study aimed to investigate the prognostic value of pathomics signatures for CM by combining pathomics and genomics.

An unsupervised deep learning framework for predicting human essential genes from population and functional genomic data.

BMC bioinformatics
BACKGROUND: The ability to accurately predict essential genes intolerant to loss-of-function (LOF) mutations can dramatically improve the identification of disease-associated genes. Recently, there have been numerous computational methods developed t...

As artificial intelligence goes multimodal, medical applications multiply.

Science (New York, N.Y.)
Machines don't have eyes, but you wouldn't know that if you followed the progression of deep learning models for accurate interpretation of medical images, such as x-rays, computed tomography (CT) and magnetic resonance imaging (MRI) scans, pathology...

A self-supervised deep learning method for data-efficient training in genomics.

Communications biology
Deep learning in bioinformatics is often limited to problems where extensive amounts of labeled data are available for supervised classification. By exploiting unlabeled data, self-supervised learning techniques can improve the performance of machine...

Recent methodological advances towards single-cell proteomics.

Proceedings of the Japan Academy. Series B, Physical and biological sciences
Studying the central dogma at the single-cell level has gained increasing attention to reveal hidden cell lineages and functions that cannot be studied using traditional bulk analyses. Nonetheless, most single-cell studies exploiting genomic and tran...

IChrom-Deep: An Attention-Based Deep Learning Model for Identifying Chromatin Interactions.

IEEE journal of biomedical and health informatics
Identification of chromatin interactions is crucial for advancing our knowledge of gene regulation. However, due to the limitations of high-throughput experimental techniques, there is an urgent need to develop computational methods for predicting ch...

Harnessing deep learning for population genetic inference.

Nature reviews. Genetics
In population genetics, the emergence of large-scale genomic data for various species and populations has provided new opportunities to understand the evolutionary forces that drive genetic diversity using statistical inference. However, the era of p...

Facing the phase problem.

IUCrJ
The marvel of X-ray crystallography is the beauty and precision of the atomic structures deduced from diffraction patterns. Since these patterns record only amplitudes, phases for the diffracted waves must also be evaluated for systematic structure d...

Cytogenetics and genomics in pediatric acute lymphoblastic leukaemia.

Best practice & research. Clinical haematology
The last five decades have witnessed significant improvement in diagnostics, treatment and management of children with acute lymphoblastic leukaemia (ALL). These advancements have become possible through progress in our understanding of the genetic a...