AIMC Topic: Internet

Clear Filters Showing 671 to 680 of 882 articles

BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies.

Nucleic acids research
BioPortal (https://bioportal.bioontology.org) is the world's most comprehensive repository of biomedical ontologies. It provides infrastructure for finding, sharing, searching, and utilizing biomedical ontologies. Launched in 2005, BioPortal now incl...

CGeNArateWeb: a web server for the atomistic study of the structure and dynamics of chromatin fibers.

Nucleic acids research
We present CGeNArateWeb, a new web tool for the three-dimensional simulation of naked DNA and protein-bound chromatin fibers. The server allows the user to obtain a dynamic representation of long segments of linear, circular, or protein-DNA segments ...

InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep.

Nucleic acids research
Predicting functional binding sites in proteins is crucial for understanding protein-protein interactions (PPIs) and identifying drug targets. While various computational approaches exist, many fail to assess PPI ligandability, which often involves c...

HawkDock version 2: an updated web server to predict and analyze the structures of protein-protein complexes.

Nucleic acids research
Protein-protein interactions (PPIs) are fundamental to cellular functions, yet predicting and analyzing their 3D structures remains a critical and computationally demanding challenge. To address this, the HawkDock web server was developed as an integ...

StructMAn 2.0 Web: a web server for structural annotation of protein sequences and mutations.

Nucleic acids research
StructMAn is a method for protein structural annotation. It describes each position of a protein sequence or specific variants in it in terms of their importance for the three-dimensional (3D) structure of the protein and its interactions with other ...

DeepMolecules: a web server for predicting enzyme and transporter-small molecule interactions.

Nucleic acids research
DeepMolecules is an easily accessible web server for predicting protein-small molecule interactions. It integrates four state-of-the-art models: ESP and SPOT for identifying substrates of enzymes and transporters, respectively, TurNuP for predicting ...

OntoTiger: a platform of ontology-based application tools for integrative biomedical exploration.

Nucleic acids research
Biomedical ontologies, such as Gene Ontology (GO), Disease Ontology (DO), and the Human Phenotype Ontology (HPO), have been extensively applied to characterize molecular roles and their semantic relationships in biomedical research and clinical pract...

TmDet 4.0: determining membrane orientation of transmembrane proteins from 3D structure.

Nucleic acids research
During the structural determination of transmembrane proteins, one crucial piece of information is lost: the orientation of the protein within the lipid bilayer. The TmDet algorithm was developed in the early 2000s to determine the relative position ...

FoldScript: a web server for the efficient analysis of AI-generated 3D protein models.

Nucleic acids research
Artificial intelligence (AI)-based 3D protein modelling software have revolutionized structural biology, often predicting protein structures with unprecedented confidence. However, to get the most out of AI, it is advisable to consider the informatio...

Probing Social Support and Self-Disclosure Within Chinese Online Domestic Violence Support Groups: Leveraging Multiple Machine Learning Approaches.

Journal of community psychology
This study examines how domestic violence victims can effectively disclose their experiences in online support groups to receive meaningful support, and how community members can provide that support. Analyzing 3455 posts and 55,787 replies from Chin...