AIMC Topic: Microbiota

Clear Filters Showing 151 to 160 of 199 articles

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization.

Nutrients Dec 1, 2017
Prebiotics and probiotics strongly impact the gut ecosystem by changing the composition and/or metabolism of the microbiota to improve the health of the host. However, the composition of the microbiota constantly changes due to the intake of daily di...
Food Ferns Probiotics Models, Biological Prebiotics Gastrointestinal Tract Microbiota Humans Machine Learning Male
View on PubMed DOI

Microbiome Tools for Forensic Science.

Trends in biotechnology Mar 30, 2017
Microbes are present at every crime scene and have been used as physical evidence for over a century. Advances in DNA sequencing and computational approaches have led to recent breakthroughs in the use of microbiome approaches for forensic science, p...
Machine Learning Algorithms Humans High-Throughput Nucleotide Sequencing Forensic Sciences Animals Microbiota
View on PubMed DOI

SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?

BMC genomics Mar 14, 2017
BACKGROUND: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to...
Gene Ontology Archaea Bacteria RNA, Ribosomal, 16S Phylogeny Algorithms Microbiota Databases, Genetic Metagenomics
View on PubMed DOI

Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes.

PloS one Apr 22, 2016
The rapid improvement of next-generation sequencing performance now enables us to analyze huge sample sets with more than ten thousand specimens. However, DNA extraction can still be a limiting step in such metagenomic approaches. In this study, we a...
Metagenomics Hot Temperature Microbiota Dental Plaque Humans Sequence Analysis, DNA High-Throughput Nucleotide Sequencing Robotics DNA, Bacterial Male Adsorption Liquid Phase Microextraction RNA, Ribosomal, 16S Pilot Projects Principal Component Analysis
View on PubMed DOI

Multi-Layer and Recursive Neural Networks for Metagenomic Classification.

IEEE transactions on nanobioscience Aug 24, 2015
Recent advances in machine learning, specifically in deep learning with neural networks, has made a profound impact on fields such as natural language processing, image classification, and language modeling; however, feasibility and potential benefit...
Microbiota Metagenomics Neural Networks, Computer Algorithms
View on PubMed DOI

Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells.

Scientific reports Jul 16, 2015
The microbiome's underlying dynamics play an important role in regulating the behavior and health of its host. In order to explore the details of these interactions, we created an in silico model of a living microbiome, engineered with synthetic biol...
Host-Pathogen Interactions Cells Models, Biological Computer Simulation Microbiota Genetic Engineering Robotics Biomimetics
View on PubMed DOI

Deep learning-based detection of bacterial swarm motion using a single image.

Gut microbes Dec 1, 2025
Motility is a fundamental characteristic of bacteria. Distinguishing between swarming and swimming, the two principal forms of bacterial movement, holds significant conceptual and clinical relevance. Conventionally, the detection of bacterial swarmin...
Humans Inflammatory Bowel Diseases Deep Learning Enterobacteriaceae Infections Movement Bacteria Microbiota Image Processing, Computer-Assisted
View on PubMed DOI

VBayesMM: variational Bayesian neural network to prioritize important relationships of high-dimensional microbiome multiomics data.

Briefings in bioinformatics Jul 2, 2025
The analysis of high-dimensional microbiome multiomics datasets is crucial for understanding the complex interactions between microbial communities and host physiological states across health and disease conditions. Despite their importance, current ...
Humans Neural Networks, Computer Bayes Theorem Computational Biology Microbiota Multiomics Algorithms Metagenomics
View on PubMed DOI

Divergence in the sow vaginal microbiota is associated with fertility.

Reproduction (Cambridge, England) Jul 1, 2025
IN BRIEF: Vaginal microbiota composition influences female fertility, however it has not been studied for measuring fertility level in female pigs. This study reveals significant vaginal microbiota composition differences between high reproductive pe...
Microbiota Fertility Vagina Animals Swine Infertility, Female Pregnancy Female
View on PubMed DOI

[Methodological breakthroughs and challenges in research of soil phage microecology].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology Jun 25, 2025
Phages, as obligate bacterial and archaeal parasites, constitute a virus group of paramount ecological significance due to their exceptional abundance and genetic diversity. These biological entities serve as critical regulators in Earth's ecosystems...
Bacteriophages Microbiota Metagenomics Ecosystem Soil Microbiology
View on PubMed DOI
Popular Topics
Recent Journals