AIMC Topic: Microscopy

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Marker-controlled watershed with deep edge emphasis and optimized H-minima transform for automatic segmentation of densely cultivated 3D cell nuclei.

BMC bioinformatics
BACKGROUND: The segmentation of 3D cell nuclei is essential in many tasks, such as targeted molecular radiotherapies (MRT) for metastatic tumours, toxicity screening, and the observation of proliferating cells. In recent years, one popular method for...

Depth Estimation for Integral Imaging Microscopy Using a 3D-2D CNN with a Weighted Median Filter.

Sensors (Basel, Switzerland)
This study proposes a robust depth map framework based on a convolutional neural network (CNN) to calculate disparities using multi-direction epipolar plane images (EPIs). A combination of three-dimensional (3D) and two-dimensional (2D) CNN-based dee...

Fast intraoperative histology-based diagnosis of gliomas with third harmonic generation microscopy and deep learning.

Scientific reports
Management of gliomas requires an invasive treatment strategy, including extensive surgical resection. The objective of the neurosurgeon is to maximize tumor removal while preserving healthy brain tissue. However, the lack of a clear tumor boundary h...

High-throughput whole-slide scanning to enable large-scale data repository building.

The Journal of pathology
Digital pathology and artificial intelligence (AI) rely on digitization of patient material as a necessary first step. AI development benefits from large sample sizes and diverse cohorts, and therefore efforts to digitize glass slides must meet these...

Enhancing classification in correlative microscopy using multiple classifier systems with dynamic selection.

Ultramicroscopy
Correlative microscopy combines data from different microscopical techniques to gain unique insights about specimens. A key requirement to unlocking the full potential is an advanced classification method that can combine the various analytical signa...

Open-source personal pipetting robots with live-cell incubation and microscopy compatibility.

Nature communications
Liquid handling robots have the potential to automate many procedures in life sciences. However, they are not in widespread use in academic settings, where funding, space and maintenance specialists are usually limiting. In addition, current robots r...

Precise measurement of nanoscopic septin ring structures with deep learning-assisted quantitative superresolution microscopy.

Molecular biology of the cell
The combination of image analysis and superresolution microscopy methods allows for unprecedented insight into the organization of macromolecular assemblies in cells. Advances in deep learning (DL)-based object recognition enable the automated proces...

Machine learning phenomics (MLP) combining deep learning with time-lapse-microscopy for monitoring colorectal adenocarcinoma cells gene expression and drug-response.

Scientific reports
High-throughput phenotyping is becoming increasingly available thanks to analytical and bioinformatics approaches that enable the use of very high-dimensional data and to the availability of dynamic models that link phenomena across levels: from gene...

Automated rare sperm identification from low-magnification microscopy images of dissociated microsurgical testicular sperm extraction samples using deep learning.

Fertility and sterility
OBJECTIVE: To develop a machine learning algorithm to detect rare human sperm in semen and microsurgical testicular sperm extraction (microTESE) samples using bright-field (BF) microscopy for nonobstructive azoospermia patients.

Analysis of Deep Learning-Based Phase Retrieval Algorithm Performance for Quantitative Phase Imaging Microscopy.

Sensors (Basel, Switzerland)
Quantitative phase imaging has been of interest to the science and engineering community and has been applied in multiple research fields and applications. Recently, the data-driven approach of artificial intelligence has been utilized in several opt...