AIMC Topic: Neoplasms

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CRlncRC: a machine learning-based method for cancer-related long noncoding RNA identification using integrated features.

BMC medical genomics
BACKGROUND: Long noncoding RNAs (lncRNAs) are widely involved in the initiation and development of cancer. Although some computational methods have been proposed to identify cancer-related lncRNAs, there is still a demanding to improve the prediction...

Learning from data to predict future symptoms of oncology patients.

PloS one
Effective symptom management is a critical component of cancer treatment. Computational tools that predict the course and severity of these symptoms have the potential to assist oncology clinicians to personalize the patient's treatment regimen more ...

Deep learning for patient-specific quality assurance: Identifying errors in radiotherapy delivery by radiomic analysis of gamma images with convolutional neural networks.

Medical physics
PURPOSE: Patient-specific quality assurance (QA) for intensity-modulated radiation therapy (IMRT) is a ubiquitous clinical procedure, but conventional methods have often been criticized as being insensitive to errors or less effective than other comm...

Integrative Gene Selection on Gene Expression Data: Providing Biological Context to Traditional Approaches.

Journal of integrative bioinformatics
The advance of high-throughput RNA-Sequencing techniques enables researchers to analyze the complete gene activity in particular cells. From the insights of such analyses, researchers can identify disease-specific expression profiles, thus understand...

Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks.

BMC bioinformatics
BACKGROUND: Real-time analysis of patient data during medical procedures can provide vital diagnostic feedback that significantly improves chances of success. With sensors becoming increasingly fast, frameworks such as Deep Neural Networks are requir...

Sparse coding of pathology slides compared to transfer learning with deep neural networks.

BMC bioinformatics
BACKGROUND: Histopathology images of tumor biopsies present unique challenges for applying machine learning to the diagnosis and treatment of cancer. The pathology slides are high resolution, often exceeding 1GB, have non-uniform dimensions, and ofte...

Scalable deep text comprehension for Cancer surveillance on high-performance computing.

BMC bioinformatics
BACKGROUND: Deep Learning (DL) has advanced the state-of-the-art capabilities in bioinformatics applications which has resulted in trends of increasingly sophisticated and computationally demanding models trained by larger and larger data sets. This ...

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.

BMC bioinformatics
BACKGROUND: Current multi-petaflop supercomputers are powerful systems, but present challenges when faced with problems requiring large machine learning workflows. Complex algorithms running at system scale, often with different patterns that require...

Tumor co-segmentation in PET/CT using multi-modality fully convolutional neural network.

Physics in medicine and biology
Automatic tumor segmentation from medical images is an important step for computer-aided cancer diagnosis and treatment. Recently, deep learning has been successfully applied to this task, leading to state-of-the-art performance. However, most of exi...

Knowledge base toward understanding actionable alterations and realizing precision oncology.

International journal of clinical oncology
In Japan, the National Cancer Center and university hospitals have initiated next-generation sequencing-based in vitro diagnostic testing for cancer patients as a method of clinical sequencing. Based on the molecular alterations detected, physicians ...