AIMC Topic: Neural Networks, Computer

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BPP: a platform for automatic biochemical pathway prediction.

Briefings in bioinformatics
A biochemical pathway consists of a series of interconnected biochemical reactions to accomplish specific life activities. The participating reactants and resultant products of a pathway, including gene fragments, proteins, and small molecules, coale...

Identifying and training deep learning neural networks on biomedical-related datasets.

Briefings in bioinformatics
This manuscript describes the development of a resources module that is part of a learning platform named 'NIGMS Sandbox for Cloud-based Learning' https://github.com/NIGMS/NIGMS-Sandbox. The overall genesis of the Sandbox is described in the editoria...

Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network.

Nucleic acids research
The intricacies of the human genome, manifested as a complex network of genes, transcend conventional representations in text or numerical matrices. The intricate gene-to-gene relationships inherent in this complexity find a more suitable depiction i...

Learning Fixed Points of Recurrent Neural Networks by Reparameterizing the Network Model.

Neural computation
In computational neuroscience, recurrent neural networks are widely used to model neural activity and learning. In many studies, fixed points of recurrent neural networks are used to model neural responses to static or slowly changing stimuli, such a...

DeepPRMS: advanced deep learning model to predict protein arginine methylation sites.

Briefings in functional genomics
Protein methylation is a form of post-translational modifications of protein, which is crucial for various cellular processes, including transcription activity and DNA repair. Correctly predicting protein methylation sites is fundamental for research...

THGNCDA: circRNA-disease association prediction based on triple heterogeneous graph network.

Briefings in functional genomics
Circular RNAs (circRNAs) are a class of noncoding RNA molecules featuring a closed circular structure. They have been proved to play a significant role in the reduction of many diseases. Besides, many researches in clinical diagnosis and treatment of...

Improved optimizer with deep learning model for emotion detection and classification.

Mathematical biosciences and engineering : MBE
Facial emotion recognition (FER) is largely utilized to analyze human emotion in order to address the needs of many real-time applications such as computer-human interfaces, emotion detection, forensics, biometrics, and human-robot collaboration. Non...

Exploring Implicit Biological Heterogeneity in ASD Diagnosis Using a Multi-Head Attention Graph Neural Network.

Journal of integrative neuroscience
BACKGROUND: Autism spectrum disorder (ASD) is a neurodevelopmental disorder exhibiting heterogeneous characteristics in patients, including variability in developmental progression and distinct neuroanatomical features influenced by sex and age. Rece...

[Constructing a cataplexy face prediction model for narcolepsy type 1 based on ResNet-18].

Zhonghua yi xue za zhi
To establish a prediction model for the identifying of cataplexy facial features based on clinical shooting videos by using a deep learning image recognition network ResNet-18. A cross-sectional study. Twenty-five narcolepsy type 1 patients who wer...

Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction.

Nucleic acids research
Evaluating pharmacokinetic properties of small molecules is considered a key feature in most drug development and high-throughput screening processes. Generally, pharmacokinetics, which represent the fate of drugs in the human body, are described fro...