AIMC Topic: Neural Networks, Computer

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Interpretable disease prediction using heterogeneous patient records with self-attentive fusion encoder.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: We propose an interpretable disease prediction model that efficiently fuses multiple types of patient records using a self-attentive fusion encoder. We assessed the model performance in predicting cardiovascular disease events, given the r...

Stimulus-Driven and Spontaneous Dynamics in Excitatory-Inhibitory Recurrent Neural Networks for Sequence Representation.

Neural computation
Recurrent neural networks (RNNs) have been widely used to model sequential neural dynamics ("neural sequences") of cortical circuits in cognitive and motor tasks. Efforts to incorporate biological constraints and Dale's principle will help elucidate ...

Spatio-temporal continuous gesture recognition under degraded environments: performance comparison between 3D integral imaging (InIm) and RGB-D sensors.

Optics express
In this paper, we introduce a deep learning-based spatio-temporal continuous human gesture recognition algorithm under degraded conditions using three-dimensional (3D) integral imaging. The proposed system is shown as an efficient continuous human ge...

Automatic algorithm for the characterization of sweat ducts in a three-dimensional fingerprint.

Optics express
In this study, an automatic algorithm has been presented based on a convolutional neural network (CNN) employing U-net. An ellipsoid and an ellipse were applied for approximation of a three-dimensional sweat duct and en face sweat pore at the differe...

DeepLINK: Deep learning inference using knockoffs with applications to genomics.

Proceedings of the National Academy of Sciences of the United States of America
We propose a deep learning-based knockoffs inference framework, DeepLINK, that guarantees the false discovery rate (FDR) control in high-dimensional settings. DeepLINK is applicable to a broad class of covariate distributions described by the possibl...

A prediction model of aquaculture water quality based on multiscale decomposition.

Mathematical biosciences and engineering : MBE
In the field of intensive aquaculture, the deterioration of water quality is one of the main factors restricting the normal growth of aquatic products. Predicting water quality in real time constitutes the theoretical basis for the evaluation, planni...

Hyperbolic relational graph convolution networks plus: a simple but highly efficient QSAR-modeling method.

Briefings in bioinformatics
Accurate predictions of druggability and bioactivities of compounds are desirable to reduce the high cost and time of drug discovery. After more than five decades of continuing developments, quantitative structure-activity relationship (QSAR) methods...

SAResNet: self-attention residual network for predicting DNA-protein binding.

Briefings in bioinformatics
Knowledge of the specificity of DNA-protein binding is crucial for understanding the mechanisms of gene expression, regulation and gene therapy. In recent years, deep-learning-based methods for predicting DNA-protein binding from sequence data have a...

A comprehensive review of the imbalance classification of protein post-translational modifications.

Briefings in bioinformatics
Post-translational modifications (PTMs) play significant roles in regulating protein structure, activity and function, and they are closely involved in various pathologies. Therefore, the identification of associated PTMs is the foundation of in-dept...

Deep embedded clustering with multiple objectives on scRNA-seq data.

Briefings in bioinformatics
In recent years, single-cell RNA sequencing (scRNA-seq) technologies have been widely adopted to interrogate gene expression of individual cells; it brings opportunities to understand the underlying processes in a high-throughput manner. Deep embedde...