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Secretory Pathway

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Machine Learning of Protein Interactions in Fungal Secretory Pathways.

PloS one
In this paper we apply machine learning methods for predicting protein interactions in fungal secretion pathways. We assume an inter-species transfer setting, where training data is obtained from a single species and the objective is to predict prote...

A reference library for assigning protein subcellular localizations by image-based machine learning.

The Journal of cell biology
Confocal micrographs of EGFP fusion proteins localized at key cell organelles in murine and human cells were acquired for use as subcellular localization landmarks. For each of the respective 789,011 and 523,319 optically validated cell images, morph...

Machine learning-based investigation of the cancer protein secretory pathway.

PLoS computational biology
Deregulation of the protein secretory pathway (PSP) is linked to many hallmarks of cancer, such as promoting tissue invasion and modulating cell-cell signaling. The collection of secreted proteins processed by the PSP, known as the secretome, is ofte...