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Workflow for Evaluating Normalization Tools for Omics Data Using Supervised and Unsupervised Machine Learning.

Journal of the American Society for Mass Spectrometry
To achieve high quality omics results, systematic variability in mass spectrometry (MS) data must be adequately addressed. Effective data normalization is essential for minimizing this variability. The abundance of approaches and the data-dependent n...

FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation.

IEEE transactions on neural networks and learning systems
The increase of available large clinical and experimental datasets has contributed to a substantial amount of important contributions in the area of biomedical image analysis. Image segmentation, which is crucial for any quantitative analysis, has es...

The preliminary in vitro study and application of deep learning algorithm in cone beam computed tomography image implant recognition.

Scientific reports
To properly repair and maintain implants, which are bone tissue implants that replace natural tooth roots, it is crucial to accurately identify their brand and specification. Deep learning has demonstrated outstanding capabilities in analysis, such a...

SpheroScan: a user-friendly deep learning tool for spheroid image analysis.

GigaScience
BACKGROUND: In recent years, 3-dimensional (3D) spheroid models have become increasingly popular in scientific research as they provide a more physiologically relevant microenvironment that mimics in vivo conditions. The use of 3D spheroid assays has...

EMDL_m6Am: identifying N6,2'-O-dimethyladenosine sites based on stacking ensemble deep learning.

BMC bioinformatics
BACKGROUND: N6, 2'-O-dimethyladenosine (mAm) is an abundant RNA methylation modification on vertebrate mRNAs and is present in the transcription initiation region of mRNAs. It has recently been experimentally shown to be associated with several human...

MLtox, online phototoxicity prediction webpage.

Toxicology in vitro : an international journal published in association with BIBRA
Phototoxicity, sometimes in the literature referred to as photo-irritation, is a chemically induced reaction requiring light. While it is generally accepted that phototoxicity testing can be performed in the majority of cases in vitro (i.e. without t...

CSM-Potential2: A comprehensive deep learning platform for the analysis of protein interacting interfaces.

Proteins
Proteins are molecular machinery that participate in virtually all essential biological functions within the cell, which are tightly related to their 3D structure. The importance of understanding protein structure-function relationship is highlighted...

Assessment of landmark detection in cephalometric radiographs with different conditions of brightness and contrast using the an artificial intelligence software.

Dento maxillo facial radiology
OBJECTIVES: To evaluate the reliability and reproducibility of an artificial intelligence (AI) software in identifying cephalometric points on lateral cephalometric radiographs considering four settings of brightness and contrast.

Machine learning: a powerful tool for identifying key microbial agents associated with specific cancer types.

PeerJ
Machine learning (ML) includes a broad class of computer programs that improve with experience and shows unique strengths in performing tasks such as clustering, classification and regression. Over the past decade, microbial communities have been imp...

TGDAUNet: Transformer and GCNN based dual-branch attention UNet for medical image segmentation.

Computers in biology and medicine
Accurate and automatic segmentation of medical images is a key step in clinical diagnosis and analysis. Currently, the successful application of Transformers' model in the field of computer vision, researchers have begun to gradually explore the appl...