AIMC Topic: Vocabulary, Controlled

Clear Filters Showing 131 to 140 of 195 articles

Automated Modeling of Clinical Narrative with High Definition Natural Language Processing Using Solor and Analysis Normal Form.

Studies in health technology and informatics
OBJECTIVE: One important concept in informatics is data which meets the principles of Findability, Accessibility, Interoperability and Reusability (FAIR). Standards, such as terminologies (findability), assist with important tasks like interoperabili...

Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies.

Database : the journal of biological databases and curation
Crop phenotypic data underpin many pre-breeding efforts to characterize variation within germplasm collections. Although there has been an increase in the global capacity for accumulating and comparing such data, a lack of consistency in the systemat...

iDISK: the integrated DIetary Supplements Knowledge base.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: To build a knowledge base of dietary supplement (DS) information, called the integrated DIetary Supplement Knowledge base (iDISK), which integrates and standardizes DS-related information from 4 existing resources.

Putting the "why" in "EHR": capturing and coding clinical cognition.

Journal of the American Medical Informatics Association : JAMIA
Complaints about electronic health records, including information overload, note bloat, and alert fatigue, are frequent topics of discussion. Despite substantial effort by researchers and industry, complaints continue noting serious adverse effects o...

Development and application of a high throughput natural language processing architecture to convert all clinical documents in a clinical data warehouse into standardized medical vocabularies.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Natural language processing (NLP) engines such as the clinical Text Analysis and Knowledge Extraction System are a solution for processing notes for research, but optimizing their performance for a clinical data warehouse remains a challen...

deepBioWSD: effective deep neural word sense disambiguation of biomedical text data.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: In biomedicine, there is a wealth of information hidden in unstructured narratives such as research articles and clinical reports. To exploit these data properly, a word sense disambiguation (WSD) algorithm prevents downstream difficulties...

MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.

Bioinformatics (Oxford, England)
MOTIVATION: A major component in increasing our understanding of the biology of an organism is the mapping of its genotypic potential into its phenotypic expression profiles. This mapping is executed by the machinery of gene regulation, which is esse...

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.

Database : the journal of biological databases and curation
Knowledge of the molecular interactions of biological and chemical entities and their involvement in biological processes or clinical phenotypes is important for data interpretation. Unfortunately, this knowledge is mostly embedded in the literature ...

Proposing New RadLex Terms by Analyzing Free-Text Mammography Reports.

Journal of digital imaging
After years of development, the RadLex terminology contains a large set of controlled terms for the radiology domain, but gaps still exist. We developed a data-driven approach to discover new terms for RadLex by mining a large corpus of radiology rep...

UMLS to DBPedia link discovery through circular resolution.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: The goal of this work is to map Unified Medical Language System (UMLS) concepts to DBpedia resources using widely accepted ontology relations from the Simple Knowledge Organization System (skos:exactMatch, skos:closeMatch) and from the Res...