AI Medical Compendium Journal:
Nature protocols

Showing 1 to 10 of 18 articles

An explainable deep learning platform for molecular discovery.

Nature protocols
Deep learning approaches have been increasingly applied to the discovery of novel chemical compounds. These predictive approaches can accurately model compounds and increase true discovery rates, but they are typically black box in nature and do not ...

From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology.

Nature protocols
Hematoxylin- and eosin-stained whole-slide images (WSIs) are the foundation of diagnosis of cancer. In recent years, development of deep learning-based methods in computational pathology has enabled the prediction of biomarkers directly from WSIs. Ho...

Design and build of small-scale magnetic soft-bodied robots with multimodal locomotion.

Nature protocols
Small-scale magnetic soft-bodied robots can be designed to operate based on different locomotion modes to navigate and function inside unstructured, confined and varying environments. These soft millirobots may be useful for medical applications wher...

A practical guide to machine-learning scoring for structure-based virtual screening.

Nature protocols
Structure-based virtual screening (SBVS) via docking has been used to discover active molecules for a range of therapeutic targets. Chemical and protein data sets that contain integrated bioactivity information have increased both in number and in si...

Advocating for neurodata privacy and neurotechnology regulation.

Nature protocols
The ability to record and alter brain activity by using implantable and nonimplantable neural devices, while poised to have significant scientific and clinical benefits, also raises complex ethical concerns. In this Perspective, we raise awareness of...

iBEAT V2.0: a multisite-applicable, deep learning-based pipeline for infant cerebral cortical surface reconstruction.

Nature protocols
The human cerebral cortex undergoes dramatic and critical development during early postnatal stages. Benefiting from advances in neuroimaging, many infant brain magnetic resonance imaging (MRI) datasets have been collected from multiple imaging sites...

I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction.

Nature protocols
Most proteins in cells are composed of multiple folding units (or domains) to perform complex functions in a cooperative manner. Relative to the rapid progress in single-domain structure prediction, there are few effective tools available for multi-d...

Artificial intelligence-enabled virtual screening of ultra-large chemical libraries with deep docking.

Nature protocols
With the recent explosion of chemical libraries beyond a billion molecules, more efficient virtual screening approaches are needed. The Deep Docking (DD) platform enables up to 100-fold acceleration of structure-based virtual screening by docking onl...

Chemometric analysis in Raman spectroscopy from experimental design to machine learning-based modeling.

Nature protocols
Raman spectroscopy is increasingly being used in biology, forensics, diagnostics, pharmaceutics and food science applications. This growth is triggered not only by improvements in the computational and experimental setups but also by the development ...

Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry.

Nature protocols
Deep learning offers the potential to extract more than meets the eye from images captured by imaging flow cytometry. This protocol describes the application of deep learning to single-cell images to perform supervised cell classification and weakly ...