AIMC Topic: Amyloid

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AggBERT: Best in Class Prediction of Hexapeptide Amyloidogenesis with a Semi-Supervised ProtBERT Model.

Journal of chemical information and modeling
The prediction of peptide amyloidogenesis is a challenging problem in the field of protein folding. Large language models, such as the ProtBERT model, have recently emerged as powerful tools in analyzing protein sequences for applications, such as pr...

Deep Learning-based structure modelling illuminates structure and function in uncharted regions of β-solenoid fold space.

Journal of structural biology
Repeat proteins are common in all domains of life and exhibit a wide range of functions. One class of repeat protein contains solenoid folds where the repeating unit consists of β-strands separated by tight turns. β-solenoids have distinguishing stru...

Rational design of functional amyloid fibrillar assemblies.

Chemical Society reviews
Amyloid fibrillar assemblies, originally identified as pathological entities in neurodegenerative diseases, have been widely adopted by various proteins to fulfill diverse biological functions in living organisms. Due to their unique features, such a...

Automatic lesion detection and segmentation in F-flutemetamol positron emission tomography images using deep learning.

Biomedical engineering online
BACKGROUND: Beta amyloid in the brain, which was originally confirmed by post-mortem examinations, can now be confirmed in living patients using amyloid positron emission tomography (PET) tracers, and the accuracy of diagnosis can be improved by beta...

Monitoring Amyloidogenesis with a 3D Deep-Learning-Guided Biolaser Imaging Array.

Nano letters
Amyloidogenesis is a critical hallmark for many neurodegenerative diseases and drug screening; however, identifying intermediate states of protein aggregates at an earlier stage remains challenging. Herein, we developed a peptide-encapsulated droplet...

Mapping the association between tau-PET and Aβ-amyloid-PET using deep learning.

Scientific reports
In Alzheimer's disease, the molecular pathogenesis of the extracellular Aβ-amyloid (Aβ) instigation of intracellular tau accumulation is poorly understood. We employed a high-resolution PET scanner, with low detection thresholds, to examine the Aβ-ta...

Deep-learning prediction of amyloid deposition from early-phase amyloid positron emission tomography imaging.

Annals of nuclear medicine
OBJECTIVE: While the use of biomarkers for the detection of early and preclinical Alzheimer's Disease has become essential, the need to wait for over an hour after injection to obtain sufficient image quality can be challenging for patients with susp...

Carvacrol protects against carbonyl osmolyte-induced structural modifications and aggregation to serum albumin: Insights from physicochemical and molecular interaction studies.

International journal of biological macromolecules
The robust use of osmolytes (i.e., polyols and sugars) in the key therapeutic regimens/formulations has questioned their impact beyond the stability of therapeutic proteins as these osmolytes trigger structural alterations into proteins including mis...

Deep-Learning-Assisted Stratification of Amyloid Beta Mutants Using Drying Droplet Patterns.

Advanced materials (Deerfield Beach, Fla.)
The development of simple and accurate methods to predict mutations in proteins remains an unsolved challenge in modern biochemistry. It is discovered that critical information about primary and secondary peptide structures can be inferred from the s...