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Amyloidogenic Proteins

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Prediction of Peptide and Protein Propensity for Amyloid Formation.

PloS one
Understanding which peptides and proteins have the potential to undergo amyloid formation and what driving forces are responsible for amyloid-like fiber formation and stabilization remains limited. This is mainly because proteins that can undergo str...

RFAmyloid: A Web Server for Predicting Amyloid Proteins.

International journal of molecular sciences
Amyloid is an insoluble fibrous protein and its mis-aggregation can lead to some diseases, such as Alzheimer's disease and Creutzfeldt⁻Jakob's disease. Therefore, the identification of amyloid is essential for the discovery and understanding of disea...

The Classifying Autoencoder: Gaining Insight into Amyloid Assembly of Peptides and Proteins.

The journal of physical chemistry. B
Despite the importance of amyloid formation in disease pathology, the understanding of the primary structure?activity relationship for amyloid-forming peptides remains elusive. Here we use a new neural-network based method of analysis: the classifyin...

PredAmyl-MLP: Prediction of Amyloid Proteins Using Multilayer Perceptron.

Computational and mathematical methods in medicine
Amyloid is generally an aggregate of insoluble fibrin; its abnormal deposition is the pathogenic mechanism of various diseases, such as Alzheimer's disease and type II diabetes. Therefore, accurately identifying amyloid is necessary to understand its...

MILAMP: Multiple Instance Prediction of Amyloid Proteins.

IEEE/ACM transactions on computational biology and bioinformatics
Amyloid proteins are implicated in several diseases such as Parkinson's, Alzheimer's, prion diseases, etc. In order to characterize the amyloidogenicity of a given protein, it is important to locate the amyloid forming hotspot regions within the prot...

Mapping the association between tau-PET and Aβ-amyloid-PET using deep learning.

Scientific reports
In Alzheimer's disease, the molecular pathogenesis of the extracellular Aβ-amyloid (Aβ) instigation of intracellular tau accumulation is poorly understood. We employed a high-resolution PET scanner, with low detection thresholds, to examine the Aβ-ta...

Rational design of functional amyloid fibrillar assemblies.

Chemical Society reviews
Amyloid fibrillar assemblies, originally identified as pathological entities in neurodegenerative diseases, have been widely adopted by various proteins to fulfill diverse biological functions in living organisms. Due to their unique features, such a...

AmorProt: Amino Acid Molecular Fingerprints Repurposing-Based Protein Fingerprint.

Biochemistry
As protein therapeutics play an important role in almost all medical fields, numerous studies have been conducted on proteins using artificial intelligence. Artificial intelligence has enabled data-driven predictions without the need for expensive ex...

Synthesizing images of tau pathology from cross-modal neuroimaging using deep learning.

Brain : a journal of neurology
Given the prevalence of dementia and the development of pathology-specific disease-modifying therapies, high-value biomarker strategies to inform medical decision-making are critical. In vivo tau-PET is an ideal target as a biomarker for Alzheimer's ...