AI Medical Compendium Topic:
Computational Biology

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Integrating dynamic models and neural networks to discover the mechanism of meteorological factors on Aedes population.

PLoS computational biology
Aedes mosquitoes, known as vectors of mosquito-borne diseases, pose significant risks to public health and safety. Modeling the population dynamics of Aedes mosquitoes requires comprehensive approaches due to the complex interplay between biological ...

HELP: A computational framework for labelling and predicting human common and context-specific essential genes.

PLoS computational biology
Machine learning-based approaches are particularly suitable for identifying essential genes as they allow the generation of predictive models trained on features from multi-source data. Gene essentiality is neither binary nor static but determined by...

Explainable biology for improved therapies in precision medicine: AI is not enough.

Best practice & research. Clinical rheumatology
Technological advances and high-throughput bio-chemical assays are rapidly changing ways how we formulate and test biological hypotheses, and how we treat patients. Most complex diseases arise on a background of genetics, lifestyle and environment fa...

SSCI: Self-Supervised Deep Learning Improves Network Structure for Cancer Driver Gene Identification.

International journal of molecular sciences
The pathogenesis of cancer is complex, involving abnormalities in some genes in organisms. Accurately identifying cancer genes is crucial for the early detection of cancer and personalized treatment, among other applications. Recent studies have used...

PROTA: A Robust Tool for Protamine Prediction Using a Hybrid Approach of Machine Learning and Deep Learning.

International journal of molecular sciences
Protamines play a critical role in DNA compaction and stabilization in sperm cells, significantly influencing male fertility and various biotechnological applications. Traditionally, identifying these proteins is a challenging and time-consuming proc...

Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS.

Nature computational science
Reproducible definition and identification of cell types is essential to enable investigations into their biological function and to understand their relevance in the context of development, disease and evolution. Current approaches model variability...

The next revolution in computational simulations: Harnessing AI and quantum computing in molecular dynamics.

Current opinion in structural biology
The integration of artificial intelligence, machine learning and quantum computing into molecular dynamics simulations is catalyzing a revolution in computational biology, improving the accuracy and efficiency of simulations. This review describes th...

Ten quick tips for ensuring machine learning model validity.

PLoS computational biology
Artificial Intelligence (AI) and Machine Learning (ML) models are increasingly deployed on biomedical and health data to shed insights on biological mechanism, predict disease outcomes, and support clinical decision-making. However, ensuring model va...