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Data Curation

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Utilizing Large language models to select literature for meta-analysis shows workload reduction while maintaining a similar recall level as manual curation.

BMC medical research methodology
BACKGROUND: Large language models (LLMs) like ChatGPT showed great potential in aiding medical research. A heavy workload in filtering records is needed during the research process of evidence-based medicine, especially meta-analysis. However, few st...

Facilitating the use of routine data to evaluate artificial intelligence solutions: lessons from the NIHR/RCR data curation workshop.

Clinical radiology
Radiology currently stands at the forefront of artificial intelligence (AI) development and deployment over many other medical subspecialities within the scope of both research and clinical practice. Given this current leadership position, it is impe...

Automated annotation of scientific texts for ML-based keyphrase extraction and validation.

Database : the journal of biological databases and curation
Advanced omics technologies and facilities generate a wealth of valuable data daily; however, the data often lack the essential metadata required for researchers to find, curate, and search them effectively. The lack of metadata poses a significant c...

Annotation Practices in Computational Pathology: A European Society of Digital and Integrative Pathology (ESDIP) Survey Study.

Laboratory investigation; a journal of technical methods and pathology
Integrating digital pathology and artificial intelligence (AI) algorithms can potentially improve diagnostic practice and precision medicine. Developing reliable, generalizable, and comparable AI algorithms depends on access to meticulously annotated...

Active learning for extracting rare adverse events from electronic health records: A study in pediatric cardiology.

International journal of medical informatics
OBJECTIVE: Automate the extraction of adverse events from the text of electronic medical records of patients hospitalized for cardiac catheterization.

Influence of Data Curation and Confidence Levels on Compound Predictions Using Machine Learning Models.

Journal of chemical information and modeling
While data curation principles and practices are a major topic in data science, they are often not explicitly considered in machine learning (ML) applications in chemistry. We have been interested in evaluating the potential effects of data curation ...

Data stewardship and curation practices in AI-based genomics and automated microscopy image analysis for high-throughput screening studies: promoting robust and ethical AI applications.

Human genomics
BACKGROUND: Researchers have increasingly adopted AI and next-generation sequencing (NGS), revolutionizing genomics and high-throughput screening (HTS), and transforming our understanding of cellular processes and disease mechanisms. However, these a...

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data.

Database : the journal of biological databases and curation
Curated resources at centralized repositories provide high-value service to users by enhancing data veracity. Curation, however, comes with a cost, as it requires dedicated time and effort from personnel with deep domain knowledge. In this paper, we ...

Machine learning tools match physician accuracy in multilingual text annotation.

Scientific reports
In the medical field, text annotation involves categorizing clinical and biomedical texts with specific medical categories, enhancing the organization and interpretation of large volumes of unstructured data. This process is crucial for developing to...

Capturing Requirements for a Data Annotation Tool for Intensive Care: Experimental User-Centered Design Study.

JMIR human factors
BACKGROUND: Increasing use of computational methods in health care provides opportunities to address previously unsolvable problems. Machine learning techniques applied to routinely collected data can enhance clinical tools and improve patient outcom...