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Data Mining

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Assessment of EMR ML Mining Methods for Measuring Association between Metal Mixture and Mortality for Hypertension.

High blood pressure & cardiovascular prevention : the official journal of the Italian Society of Hypertension
INTRODUCTION: There are limited data available regarding the connection between heavy metal exposure and mortality among hypertension patients.

Adaptive neighborhood triplet loss: enhanced segmentation of dermoscopy datasets by mining pixel information.

International journal of computer assisted radiology and surgery
PURPOSE: The integration of deep learning in image segmentation technology markedly improves the automation capabilities of medical diagnostic systems, reducing the dependence on the clinical expertise of medical professionals. However, the accuracy ...

Joint extraction of Chinese medical entities and relations based on RoBERTa and single-module global pointer.

BMC medical informatics and decision making
BACKGROUND: Most Chinese joint entity and relation extraction tasks in medicine involve numerous nested entities, overlapping relations, and other challenging extraction issues. In response to these problems, some traditional methods decompose the jo...

The changing landscape of text mining: a review of approaches for ecology and evolution.

Proceedings. Biological sciences
In ecology and evolutionary biology, the synthesis and modelling of data from published literature are commonly used to generate insights and test theories across systems. However, the tasks of searching, screening, and extracting data from literatur...

Rare disease diagnosis using knowledge guided retrieval augmentation for ChatGPT.

Journal of biomedical informatics
Although rare diseases individually have a low prevalence, they collectively affect nearly 400 million individuals around the world. On average, it takes five years for an accurate rare disease diagnosis, but many patients remain undiagnosed or misdi...

Leveraging shortest dependency paths in low-resource biomedical relation extraction.

BMC medical informatics and decision making
BACKGROUND: Biomedical Relation Extraction (RE) is essential for uncovering complex relationships between biomedical entities within text. However, training RE classifiers is challenging in low-resource biomedical applications with few labeled exampl...

From Web to RheumaLpack: Creating a Linguistic Corpus for Exploitation and Knowledge Discovery in Rheumatology.

Computers in biology and medicine
This study introduces RheumaLinguisticpack (RheumaLpack), the first specialised linguistic web corpus designed for the field of musculoskeletal disorders. By combining web mining (i.e., web scraping) and natural language processing (NLP) techniques, ...

Information extraction from medical case reports using OpenAI InstructGPT.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Researchers commonly use automated solutions such as Natural Language Processing (NLP) systems to extract clinical information from large volumes of unstructured data. However, clinical text's poor semantic structure and dom...

Versatile Deep Learning Pipeline for Transferable Chemical Data Extraction.

Journal of chemical information and modeling
Chemical information disseminated in scientific documents offers an untapped potential for deep learning-assisted insights and breakthroughs. Automated extraction efforts have shifted from resource-intensive manual extraction toward applying machine ...

Identifying symptom etiologies using syntactic patterns and large language models.

Scientific reports
Differential diagnosis is a crucial aspect of medical practice, as it guides clinicians to accurate diagnoses and effective treatment plans. Traditional resources, such as medical books and services like UpToDate, are constrained by manual curation, ...