IEEE/ACM transactions on computational biology and bioinformatics
Jan 1, 2015
We introduce RLIMS-P version 2.0, an enhanced rule-based information extraction (IE) system for mining kinase, substrate, and phosphorylation site information from scientific literature. Consisting of natural language processing and IE modules, the s...
International journal of data mining and bioinformatics
Jan 1, 2015
Named Entity Recognition and Classification (NERC) is an important task in information extraction for biomedicine domain. Biomedical Named Entities include mentions of proteins, genes, DNA, RNA, etc. which, in general, have complex structures and are...
Studies in health technology and informatics
Jan 1, 2015
Data quality was placed as a major reason for the low utility of patient safety event reporting systems. A pressing need in improving data quality has advanced recent research focus in data entry associated with human factors. The debate on structure...
Studies in health technology and informatics
Jan 1, 2015
Open access (OA) resources and local libraries often have their own literature databases, especially in the field of biomedicine. We have developed a method of linking a local library to a biomedical OA resource facilitating researchers' full-text ar...
Studies in health technology and informatics
Jan 1, 2015
A clinical decision support system is able to provide oncologists with suitable treatment options at the moment of decision making regarding which chemotherapy protocol is the best to apply to a particular oncological case. The National Cancer Instit...
Studies in health technology and informatics
Jan 1, 2015
This article describes the process of building an ontology to assist medical students and professionals specialized in Oncology. The ontology allows the user to obtain knowledge more quickly and thus assist professionals in their decision-making.
Studies in health technology and informatics
Jan 1, 2015
Depression in adolescence is associated with significant suicidality. Therefore, it is important to detect the risk for depression and provide timely care to adolescents. This study aims to develop an ontology for collecting and analyzing social medi...
Studies in health technology and informatics
Jan 1, 2015
Literature-based discovery (LBD) generates discoveries, or hypotheses, by combining what is already known in the literature. Potential discoveries have the form of relations between biomedical concepts; for example, a drug may be determined to treat ...
Studies in health technology and informatics
Jan 1, 2015
To compare term occurrences in free-text radiology reports and RSNA reporting templates, we selected five templates from an RSNA reporting template library and their corresponding free-text reports as a test set, and employed the Wilcoxon signed-rank...
Studies in health technology and informatics
Jan 1, 2015
Self-service cohort discovery tools strive to provide intuitive interfaces to large Clinical Data Warehouses that contain extensive historic information. In those tools, controlled vocabulary (e.g., ICD-9-CM, CPT) coded clinical information is often ...
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