AIMC Topic: Deep Learning

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AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.

Bioinformatics (Oxford, England)
MOTIVATION: Biomedical named entity recognition (BioNER) seeks to automatically recognize biomedical entities in natural language text, serving as a necessary foundation for downstream text mining tasks and applications such as information extraction...

AcrNET: predicting anti-CRISPR with deep learning.

Bioinformatics (Oxford, England)
MOTIVATION: As an important group of proteins discovered in phages, anti-CRISPR inhibits the activity of the immune system of bacteria (i.e. CRISPR-Cas), offering promise for gene editing and phage therapy. However, the prediction and discovery of an...

3D-MSNet: a point cloud-based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data.

Bioinformatics (Oxford, England)
MOTIVATION: Liquid chromatography coupled with high-resolution mass spectrometry is widely used in composition profiling in untargeted metabolomics research. While retaining complete sample information, mass spectrometry (MS) data naturally have the ...

Fingerprints as Predictors of Schizophrenia: A Deep Learning Study.

Schizophrenia bulletin
BACKGROUND AND HYPOTHESIS: The existing developmental bond between fingerprint generation and growth of the central nervous system points to a potential use of fingerprints as risk markers in schizophrenia. However, the high complexity of fingerprint...

Multimodal deep learning methods enhance genomic prediction of wheat breeding.

G3 (Bethesda, Md.)
While several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes in plant breeding research, few methods have linked genomics and phenomics (imaging). Deep ...

Deep learning method of stochastic reconstruction of three-dimensional digital cores from a two-dimensional image.

Physical review. E
Digital cores can characterize the true internal structure of rocks at the pore scale. This method has become one of the most effective ways to quantitatively analyze the pore structure and other properties of digital cores in rock physics and petrol...

Deep learning-based detection of diabetic macular edema using optical coherence tomography and fundus images: A meta-analysis.

Indian journal of ophthalmology
Diabetic macular edema (DME) is an important cause of visual impairment in the working-age group. Deep learning methods have been developed to detect DME from two-dimensional retinal images and also from optical coherence tomography (OCT) images. The...

Deep Learning Using Preoperative AS-OCT Predicts Graft Detachment in DMEK.

Translational vision science & technology
PURPOSE: To evaluate a novel deep learning algorithm to distinguish between eyes that may or may not have a graft detachment based on pre-Descemet membrane endothelial keratoplasty (DMEK) anterior segment optical coherence tomography (AS-OCT) images.

RGC-Net: An Automatic Reconstruction and Quantification Algorithm for Retinal Ganglion Cells Based on Deep Learning.

Translational vision science & technology
PURPOSE: The purpose of this study was to develop a deep learning-based fully automated reconstruction and quantification algorithm which automatically delineates the neurites and somas of retinal ganglion cells (RGCs).