AIMC Topic: Deep Learning

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Rapid cancer diagnosis using deep learning-powered label-free subcellular-resolution photoacoustic histology.

Science advances
Traditional hematoxylin and eosin staining in formalin-fixed paraffin-embedded sections, while essential for diagnostic pathology, is time-consuming, labor intensive, and prone to artifacts that can obscure critical histological details. Label-free u...

AI-driven multi-omics integration in precision oncology: bridging the data deluge to clinical decisions.

Clinical and experimental medicine
Cancer's staggering molecular heterogeneity demands innovative approaches beyond traditional single-omics methods. The integration of multi-omics data, spanning genomics, transcriptomics, proteomics, metabolomics and radiomics, can improve diagnostic...

Lightweight deep neural networks: Optimization of vehicle classification using ICBAM based on depthwise separable convolutions.

PloS one
Vehicle classification is a core task in intelligent transportation systems, where high demands are placed on both computational efficiency and generalization ability in practical applications. Existing deep learning models often struggle to meet the...

Random rotational embedding Bayesian optimization for human-in-the-loop personalized music generation.

PloS one
Generative deep learning models, such as those used for music generation, can produce a wide variety of results based on perturbations of random points in their latent space. User preferences can be incorporated in the generative process by replacing...

Deep learning-driven investigation of nanoplastic impacts on soil protist behavior in soil chips.

Environmental pollution (Barking, Essex : 1987)
Nanoplastics are emerging environmental contaminants that increasingly threaten soil ecosystems, yet their effects on microbial behavior remain poorly understood. This is mainly due to the lack of experimental tools capable of directly observing micr...

Benchmarking Sequence-Based Compound-Protein Interaction Prediction through Constructing a Debiased Data Set CDPN.

Journal of chemical information and modeling
Accurate prediction of compound-protein interactions (CPIs) is critical for drug discovery, but existing data sets often suffer from biases that hinder model generalization. Here, we first highlighted that over-represented molecular scaffolds and imb...

Structure-enhanced graph meta learning for few-shot gene regulatory network inference.

Genome biology
Inferring gene regulatory networks (GRNs) is essential for understanding biological regulation. Although numerous deep learning approaches have been developed for GRN inference, most require large amounts of labeled data. We present Meta-TGLink, a st...

scSpecies: enhancement of network architecture alignment in comparative single-cell studies.

Genome biology
Animals can provide meaningful context for human single-cell data. To transfer information between species, we propose a deep learning approach that pre-trains a conditional variational autoencoder on animal data and transfers its final encoder layer...

Benchmarking deep learning methods for biologically conserved single-cell integration.

Genome biology
BACKGROUND: Advancements in single-cell RNA sequencing have enabled the analysis of millions of cells, but integrating such data across samples and methods while mitigating batch effects remains challenging. Deep learning approaches address this by l...

A systematic longitudinal study of microbiome: integrating temporal-spatial dimensions with causal and deep learning models.

BMC genomics
Longitudinal microbiome data provide a unique opportunity to explore dynamic interactions between microbial communities and disease progression. However, these data are often characterized by missing values, sparse signals, and limited interpretabili...