AI Medical Compendium Topic:
Information Storage and Retrieval

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Applying artificial intelligence in the microbiome for gastrointestinal diseases: A review.

Journal of gastroenterology and hepatology Apr 1, 2021
For a long time, gut bacteria have been recognized for their important roles in the occurrence and progression of gastrointestinal diseases like colorectal cancer, and the ever-increasing amounts of microbiome data combined with other high-quality cl...
Datasets as Topic Information Storage and Retrieval Gastrointestinal Diseases Artificial Intelligence Big Data Gastrointestinal Microbiome
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UMLS-based data augmentation for natural language processing of clinical research literature.

Journal of the American Medical Informatics Association : JAMIA Mar 18, 2021
OBJECTIVE: The study sought to develop and evaluate a knowledge-based data augmentation method to improve the performance of deep learning models for biomedical natural language processing by overcoming training data scarcity.
Natural Language Processing Information Storage and Retrieval Unified Medical Language System Biomedical Research Data Management
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Building longitudinal medication dose data using medication information extracted from clinical notes in electronic health records.

Journal of the American Medical Informatics Association : JAMIA Mar 18, 2021
OBJECTIVE: To develop an algorithm for building longitudinal medication dose datasets using information extracted from clinical notes in electronic health records (EHRs).
Pharmaceutical Preparations Information Storage and Retrieval Drug Therapy Electronic Health Records Humans Natural Language Processing Algorithms
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Highly accurate classification of chest radiographic reports using a deep learning natural language model pre-trained on 3.8 million text reports.

Bioinformatics (Oxford, England) Jan 29, 2021
MOTIVATION: The development of deep, bidirectional transformers such as Bidirectional Encoder Representations from Transformers (BERT) led to an outperformance of several Natural Language Processing (NLP) benchmarks. Especially in radiology, large am...
Humans Neural Networks, Computer Machine Learning Deep Learning Information Storage and Retrieval Natural Language Processing
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An evaluation of two commercial deep learning-based information retrieval systems for COVID-19 literature.

Journal of the American Medical Informatics Association : JAMIA Jan 15, 2021
The COVID-19 pandemic has resulted in a tremendous need for access to the latest scientific information, leading to both corpora for COVID-19 literature and search engines to query such data. While most search engine research is performed in academia...
Information Systems Search Engine SARS-CoV-2 Deep Learning Information Storage and Retrieval Humans COVID-19
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Bias at warp speed: how AI may contribute to the disparities gap in the time of COVID-19.

Journal of the American Medical Informatics Association : JAMIA Jan 15, 2021
The COVID-19 pandemic is presenting a disproportionate impact on minorities in terms of infection rate, hospitalizations, and mortality. Many believe artificial intelligence (AI) is a solution to guide clinical decision-making for this novel disease,...
Bias Healthcare Disparities Minority Groups Clinical Decision-Making United States Information Storage and Retrieval Health Status Disparities Resource Allocation Humans Artificial Intelligence COVID-19
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Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.

Nucleic acids research Jan 8, 2021
The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the community model organism knowledgebase for the laboratory mouse, a widely used animal model for comparative studies of the genetic and genomic basis for human health and disease. ...
Humans COVID-19 SARS-CoV-2 Knowledge Bases Animals Gene Ontology Mice Databases, Genetic Information Storage and Retrieval Data Curation Disease Models, Animal Genomics Genome Internet Epidemics
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Biomedical named entity recognition and linking datasets: survey and our recent development.

Briefings in bioinformatics Dec 1, 2020
Natural language processing (NLP) is widely applied in biological domains to retrieve information from publications. Systems to address numerous applications exist, such as biomedical named entity recognition (BNER), named entity normalization (NEN) ...
Information Storage and Retrieval Natural Language Processing PubMed Data Mining Surveys and Questionnaires Neural Networks, Computer Computational Biology Software Databases, Factual
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PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records.

Journal of the American Medical Informatics Association : JAMIA Nov 1, 2020
OBJECTIVE: Developing algorithms to extract phenotypes from electronic health records (EHRs) can be challenging and time-consuming. We developed PheMap, a high-throughput phenotyping approach that leverages multiple independent, online resources to s...
Polymorphism, Single Nucleotide Knowledge Bases Algorithms Genome-Wide Association Study Hypothyroidism Information Storage and Retrieval Humans Phenotype Diabetes Mellitus, Type 2 Natural Language Processing Terminology as Topic Electronic Health Records Adult Dementia
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The impact of learning Unified Medical Language System knowledge embeddings in relation extraction from biomedical texts.

Journal of the American Medical Informatics Association : JAMIA Oct 1, 2020
OBJECTIVE: We explored how knowledge embeddings (KEs) learned from the Unified Medical Language System (UMLS) Metathesaurus impact the quality of relation extraction on 2 diverse sets of biomedical texts.
Information Storage and Retrieval Deep Learning Knowledge Bases Unified Medical Language System
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