AIMC Topic: Machine Learning

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Learning the Personalized Intransitive Preferences of Images.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society
Most of the previous studies on the user preferences assume that there is a personal transitive preference ranking of the consumable media like images. For example, the transitivity of preferences is one of the most important assumptions in the recom...

modlAMP: Python for antimicrobial peptides.

Bioinformatics (Oxford, England)
SUMMARY: We have implemented the lecular esign aboratory's nti icrobial eptides package ( ), a Python-based software package for the design, classification and visual representation of peptide data. modlAMP offers functions for molecular descriptor c...

A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy.

Bioinformatics (Oxford, England)
MOTIVATION: Residue-residue contacts are of great value for protein structure prediction, since contact information, especially from those long-range residue pairs, can significantly reduce the complexity of conformational sampling for protein struct...

Neuro-symbolic representation learning on biological knowledge graphs.

Bioinformatics (Oxford, England)
MOTIVATION: Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries. In the past years, feature learning methods that are applicable to g...

HLA class I binding prediction via convolutional neural networks.

Bioinformatics (Oxford, England)
MOTIVATION: Many biological processes are governed by protein-ligand interactions. One such example is the recognition of self and non-self cells by the immune system. This immune response process is regulated by the major histocompatibility complex ...

Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: As the US Food and Drug Administration (FDA) receives over a million adverse event reports associated with medication use every year, a system is needed to aid FDA safety evaluators in identifying reports most likely to demonstrate causal ...

Machine Learning, Sentiment Analysis, and Tweets: An Examination of Alzheimer's Disease Stigma on Twitter.

The journals of gerontology. Series B, Psychological sciences and social sciences
OBJECTIVES: Social scientists need practical methods for harnessing large, publicly available datasets that inform the social context of aging. We describe our development of a semi-automated text coding method and use a content analysis of Alzheimer...

Deep learning in bioinformatics.

Briefings in bioinformatics
In the era of big data, transformation of biomedical big data into valuable knowledge has been one of the most important challenges in bioinformatics. Deep learning has advanced rapidly since the early 2000s and now demonstrates state-of-the-art perf...

A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.

Nucleic acids research
Characterizing the binding behaviors of RNA-binding proteins (RBPs) is important for understanding their functional roles in gene expression regulation. However, current high-throughput experimental methods for identifying RBP targets, such as CLIP-s...