AIMC Topic: Models, Chemical

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Deep Generative Models for Molecular Science.

Molecular informatics
Generative deep machine learning models now rival traditional quantum-mechanical computations in predicting properties of new structures, and they come with a significantly lower computational cost, opening new avenues in computational molecular scie...

K: Protein-Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks.

Journal of chemical information and modeling
Accurately predicting protein-ligand binding affinities is an important problem in computational chemistry since it can substantially accelerate drug discovery for virtual screening and lead optimization. We propose here a fast machine-learning appro...

Recurrent Neural Network Model for Constructive Peptide Design.

Journal of chemical information and modeling
We present a generative long short-term memory (LSTM) recurrent neural network (RNN) for combinatorial de novo peptide design. RNN models capture patterns in sequential data and generate new data instances from the learned context. Amino acid sequenc...

Artificial intelligence exploration of unstable protocells leads to predictable properties and discovery of collective behavior.

Proceedings of the National Academy of Sciences of the United States of America
Protocell models are used to investigate how cells might have first assembled on Earth. Some, like oil-in-water droplets, can be seemingly simple models, while able to exhibit complex and unpredictable behaviors. How such simple oil-in-water systems ...

Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition.

Journal of chemical information and modeling
Inspired by natural language processing techniques, we here introduce Mol2vec, which is an unsupervised machine learning approach to learn vector representations of molecular substructures. Like the Word2vec models, where vectors of closely related w...

Transparent predictive modelling of the twin screw granulation process using a compensated interval type-2 fuzzy system.

European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V
In this research, a new systematic modelling framework which uses machine learning for describing the granulation process is presented. First, an interval type-2 fuzzy model is elicited in order to predict the properties of the granules produced by t...

Transductive Ridge Regression in Structure-activity Modeling.

Molecular informatics
In this article we consider the application of the Transductive Ridge Regression (TRR) approach to structure-activity modeling. An original procedure of the TRR parameters optimization is suggested. Calculations performed on 3 different datasets invo...

Generative Recurrent Networks for De Novo Drug Design.

Molecular informatics
Generative artificial intelligence models present a fresh approach to chemogenomics and de novo drug design, as they provide researchers with the ability to narrow down their search of the chemical space and focus on regions of interest. We present a...

Machine Learning for Silver Nanoparticle Electron Transfer Property Prediction.

Journal of chemical information and modeling
Nanoparticles exhibit diverse structural and morphological features that are often interconnected, making the correlation of structure/property relationships challenging. In this study a multi-structure/single-property relationship of silver nanopart...

Demystifying Multitask Deep Neural Networks for Quantitative Structure-Activity Relationships.

Journal of chemical information and modeling
Deep neural networks (DNNs) are complex computational models that have found great success in many artificial intelligence applications, such as computer vision1,2 and natural language processing.3,4 In the past four years, DNNs have also generated p...