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Facilitating Full-text Access to Biomedical Literature Using Open Access Resources.

Studies in health technology and informatics
Open access (OA) resources and local libraries often have their own literature databases, especially in the field of biomedicine. We have developed a method of linking a local library to a biomedical OA resource facilitating researchers' full-text ar...

Representation of Biomedical Expertise in Ontologies: a Case Study about Knowledge Acquisition on HTLV viruses and their clinical manifestations.

Studies in health technology and informatics
In this paper, we introduce a set of methodological steps for knowledge acquisition applied to the organization of biomedical information through ontologies. Those steps are tested in a real case involving Human T Cell Lymphotropic Virus (HTLV), whic...

Constructing a Graph Database for Semantic Literature-Based Discovery.

Studies in health technology and informatics
Literature-based discovery (LBD) generates discoveries, or hypotheses, by combining what is already known in the literature. Potential discoveries have the form of relations between biomedical concepts; for example, a drug may be determined to treat ...

Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations.

Studies in health technology and informatics
The massive accumulation of biomedical knowledge is reflected by the growth of the literature database MEDLINE with over 23 million bibliographic records. All records are manually indexed by MeSH descriptors, many of them refined by MeSH subheadings....

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature.

Studies in health technology and informatics
Relation extraction typically involves the extraction of relations between two or more entities occurring within a single or multiple sentences. In this study, we investigated the significance of extracting information from multiple sentences specifi...

Sharing models and tools for processing German clinical texts.

Studies in health technology and informatics
The automatic processing of non-English clinical documents is massively hampered by the lack of publicly available medical language resources for training, testing and evaluating NLP components. We suggest sharing statistical models derived from acce...