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Pharmaceutical Preparations

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Binding affinity prediction for binary drug-target interactions using semi-supervised transfer learning.

Journal of computer-aided molecular design
In the field of drug-target interactions prediction, the majority of approaches formulated the problem as a simple binary classification task. These methods used binary drug-target interaction datasets to train their models. The prediction of drug-ta...

Flexibility in Drug Product Development: A Perspective.

Molecular pharmaceutics
The process of bringing a drug to market involves innumerable decisions to refine a concept into a final product. The final product goes through extensive research and development to meet the target product profile and to obtain a product that is man...

Drug repurposing: Iron in the fire for older drugs.

Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie
Repositioning or "repurposing" of existing therapies for indications of alternative disease is an attractive approach that can generate lower costs and require a shorter approval time than developing a de novo drug. The development of experimental dr...

Predicting Drug-Target Interactions with Deep-Embedding Learning of Graphs and Sequences.

The journal of physical chemistry. A
Computational approaches for predicting drug-target interactions (DTIs) play an important role in drug discovery since conventional screening experiments are time-consuming and expensive. In this study, we proposed end-to-end representation learning ...

Novel deep learning-based transcriptome data analysis for drug-drug interaction prediction with an application in diabetes.

BMC bioinformatics
BACKGROUND: Drug-drug interaction (DDI) is a serious public health issue. The L1000 database of the LINCS project has collected millions of genome-wide expressions induced by 20,000 small molecular compounds on 72 cell lines. Whether this unified and...

Algebraic graph-assisted bidirectional transformers for molecular property prediction.

Nature communications
The ability of molecular property prediction is of great significance to drug discovery, human health, and environmental protection. Despite considerable efforts, quantitative prediction of various molecular properties remains a challenge. Although s...

Automated and enabling technologies for medicinal chemistry.

Progress in medicinal chemistry
Having always been driven by the need to get new treatments to patients as quickly as possible, drug discovery is a constantly evolving process. This chapter will review how medicinal chemistry was established, how it has changed over the years due t...

Extracting Adverse Drug Events from Clinical Notes.

AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science
Adverse drug events (ADEs) are unexpected incidents caused by the administration of a drug or medication. To identify and extract these events, we require information about not just the drug itself but attributes describing the drug (e.g., strength, ...

Drug Target Identification with Machine Learning: How to Choose Negative Examples.

International journal of molecular sciences
Identification of the protein targets of hit molecules is essential in the drug discovery process. Target prediction with machine learning algorithms can help accelerate this search, limiting the number of required experiments. However, Drug-Target I...

Deep-learning models for lipid nanoparticle-based drug delivery.

Nanomedicine (London, England)
Early prediction of time-lapse microscopy experiments enables intelligent data management and decision-making. Using time-lapse data of HepG2 cells exposed to lipid nanoparticles loaded with mRNA for expression of GFP, the authors hypothesized that...