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A Narrative Literature Review of Natural Language Processing Applied to the Occupational Exposome.

International journal of environmental research and public health
UNLABELLED: The evolution of the Exposome concept revolutionised the research in exposure assessment and epidemiology by introducing the need for a more holistic approach on the exploration of the relationship between the environment and disease. At ...

Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics.

Database : the journal of biological databases and curation
The identification of chemicals in articles has attracted a large interest in the biomedical scientific community, given its importance in drug development research. Most of previous research have focused on PubMed abstracts, and further investigatio...

Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.

Journal of biomedical informatics
OBJECTIVE: Develop a novel methodology to create a comprehensive knowledge graph (SuppKG) to represent a domain with limited coverage in the Unified Medical Language System (UMLS), specifically dietary supplement (DS) information for discovering drug...

Artificial Intelligence Solutions to Detect Fraud in Healthcare Settings: A Scoping Review.

Studies in health technology and informatics
Over the past decade, Artificial Intelligence (AI) technologies have quickly become implemented in protecting data, including detecting fraud in healthcare organizations. This scoping review aims to explore AI solutions utilized in fraud detection oc...

Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes.

Scientific data
Medicinal plants have demonstrated therapeutic potential for applicability for a wide range of observable characteristics in the human body, known as "phenotype," and have been considered favorably in clinical treatment. With an ever increasing inter...

Named Entity Recognition in Pubmed Abstracts for Pharmacovigilance Using Deep Learning.

Studies in health technology and informatics
Methods of natural language processing associated with machine learning or deep learning can support detection of adverse drug reactions in abstracts of case reports available on Pubmed. In 2012, Gurulingappa et al. proposed a training set for the re...

Performance of Machine Learning Methods to Classify French Medical Publications.

Studies in health technology and informatics
Many medical narratives are read by care professionals in their preferred language. These documents can be produced by organizations, authorities or national publishers. However, they are often hardly findable using the usual query engines based on E...

REDIRECT: Mapping Drug Prescriptions and Evidence from Biomedical Literature.

Studies in health technology and informatics
To enhance their practice, healthcare professionals need to cross-link various usage recommendations provided by heterogeneous vocabularies that must be retrieved and integrated conjointly. This is the aim of the Knowledge Warehouse / K-Ware platform...

Benchmarking for biomedical natural language processing tasks with a domain specific ALBERT.

BMC bioinformatics
BACKGROUND: The abundance of biomedical text data coupled with advances in natural language processing (NLP) is resulting in novel biomedical NLP (BioNLP) applications. These NLP applications, or tasks, are reliant on the availability of domain-speci...

A web-based tool for automatically linking clinical trials to their publications.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Evidence synthesis teams, physicians, policy makers, and patients and their families all have an interest in following the outcomes of clinical trials and would benefit from being able to evaluate both the results posted in trial registrie...