AIMC Topic: PubMed

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BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.

PLoS computational biology Apr 23, 2020
A massive number of biological entities, such as genes and mutations, are mentioned in the biomedical literature. The capturing of the semantic relatedness of biological entities is vital to many biological applications, such as protein-protein inter...
Electronic Health Records Deep Learning Computational Biology Humans Algorithms Semantics Drug Interactions Databases, Protein Protein Interaction Mapping PubMed Publications Data Mining
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Artificial Intelligence (AI) applications for COVID-19 pandemic.

Diabetes & metabolic syndrome Apr 14, 2020
BACKGROUND AND AIMS: Healthcare delivery requires the support of new technologies like Artificial Intelligence (AI), Internet of Things (IoT), Big Data and Machine Learning to fight and look ahead against the new diseases. We aim to review the role o...
SARS-CoV-2 Viral Vaccines COVID-19 Vaccines Health Personnel Delivery of Health Care COVID-19 Drug Treatment Betacoronavirus Pneumonia, Viral Workload Humans PubMed Coronavirus Infections Artificial Intelligence Pandemics COVID-19
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Systematic Evaluation of Research Progress on Natural Language Processing in Medicine Over the Past 20 Years: Bibliometric Study on PubMed.

Journal of medical Internet research Jan 23, 2020
BACKGROUND: Natural language processing (NLP) is an important traditional field in computer science, but its application in medical research has faced many challenges. With the extensive digitalization of medical information globally and increasing i...
PubMed Humans Precision Medicine Time Factors Bibliometrics Natural Language Processing
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PGxCorpus, a manually annotated corpus for pharmacogenomics.

Scientific data Jan 2, 2020
Pharmacogenomics (PGx) studies how individual gene variations impact drug response phenotypes, which makes PGx-related knowledge a key component towards precision medicine. A significant part of the state-of-the-art knowledge in PGx is accumulated in...
Pharmacogenetics Supervised Machine Learning PubMed Humans Data Curation
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Association extraction from biomedical literature based on representation and transfer learning.

Journal of theoretical biology Dec 25, 2019
Extracting biological relations from biomedical literature can deliver personalized treatment to individual patients based on their genomic profiles. In this paper, we present a novel sentence-level attention-based deep neural network to predict the ...
Research Design Publications PubMed Neural Networks, Computer Machine Learning Humans
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SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions.

Artificial intelligence in medicine Nov 28, 2019
BACKGROUND AND OBJECTIVE: Question answering (QA), the identification of short accurate answers to users questions written in natural language expressions, is a longstanding issue widely studied over the last decades in the open-domain. However, it s...
Biomedical Technology Automation Unified Medical Language System Humans PubMed Information Storage and Retrieval Medical Informatics Machine Learning Algorithms Natural Language Processing
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Disease phenotype synonymous prediction through network representation learning from PubMed database.

Artificial intelligence in medicine Nov 19, 2019
Synonym mapping between phenotype concepts from different terminologies is difficult because terminology databases have been developed largely independently. Existing maps of synonymous phenotype concepts from different terminology databases are high...
Machine Learning Algorithms Phenotype Computer Simulation Reproducibility of Results PubMed Humans Neural Networks, Computer Automation Disease
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Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes.

Journal of biomedical semantics Nov 12, 2019
BACKGROUND: Deep Learning opens up opportunities for routinely scanning large bodies of biomedical literature and clinical narratives to represent the meaning of biomedical and clinical terms. However, the validation and integration of this knowledge...
Knowledge Bases Semantics Biological Ontologies Veterinarians One Health Deep Learning Systematic Reviews as Topic PubMed
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Towards a characterization of apparent contradictions in the biomedical literature using context analysis.

Journal of biomedical informatics Aug 29, 2019
BACKGROUND: With the substantial growth in the biomedical research literature, a larger number of claims are published daily, some of which seemingly disagree with or contradict prior claims on the same topics. Resolving such contradictions is critic...
Information Storage and Retrieval Semantics Publications PubMed Humans Reproducibility of Results Biomedical Research Natural Language Processing
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Trends in Alzheimer's Disease Research Based upon Machine Learning Analysis of PubMed Abstracts.

International journal of biological sciences Aug 6, 2019
About 29.8 million people worldwide had been diagnosed with Alzheimer's disease (AD) in 2015, and the number is projected to triple by 2050. In 2018, AD was the fifth leading cause of death in Americans with 65 years of age or older, but the progress...
Alzheimer Disease Biomedical Research Humans United States Machine Learning PubMed
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