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A machine learning and network framework to discover new indications for small molecules.

PLoS computational biology Aug 7, 2020
Drug repurposing, identifying novel indications for drugs, bypasses common drug development pitfalls to ultimately deliver therapies to patients faster. However, most repurposing discoveries have been led by anecdotal observations (e.g. Viagra) or ex...
Machine Learning Computational Biology Hypoglycemic Agents Models, Statistical Software Algorithms Drug Repositioning Antiparkinson Agents
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A deep attention network for predicting amino acid signals in the formation of [Formula: see text]-helices.

Journal of bioinformatics and computational biology Aug 6, 2020
The secondary and tertiary structure of a protein has a primary role in determining its function. Even though many folding prediction algorithms have been developed in the past decades - mainly based on the assumption that folding instructions are en...
Machine Learning Amino Acids Databases, Protein Software Models, Molecular Protein Structure, Secondary Protein Conformation, alpha-Helical
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Classifying Breast Cancer Subtypes Using Deep Neural Networks Based on Multi-Omics Data.

Genes Aug 4, 2020
With the high prevalence of breast cancer, it is urgent to find out the intrinsic difference between various subtypes, so as to infer the underlying mechanisms. Given the available multi-omics data, their proper integration can improve the accuracy o...
Female Breast Neoplasms Gene Regulatory Networks Mutation Genomics Transcriptome DNA Methylation Humans DNA Copy Number Variations Neural Networks, Computer Software
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Impact of radiomics on the breast ultrasound radiologist's clinical practice: From lumpologist to data wrangler.

European journal of radiology Jul 30, 2020
OBJECTIVE: The study aims to assess the impact of radiomics in the clinical practice of breast ultrasound, to determine which lesions are undetermined by the software, and to discuss the future of the radiologist's role.
Physician's Role Phyllodes Tumor Artificial Intelligence Breast Software Fibroadenoma Female Biopsy ROC Curve Ultrasonography, Mammary Humans Diagnosis, Differential Sensitivity and Specificity Radiologists Breast Neoplasms
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ASSAF: Advanced and Slim StegAnalysis Detection Framework for JPEG images based on deep convolutional denoising autoencoder and Siamese networks.

Neural networks : the official journal of the International Neural Network Society Jul 29, 2020
Steganography is the art of embedding a confidential message within a host message. Modern steganography is focused on widely used multimedia file formats, such as images, video files, and Internet protocols. Recently, cyber attackers have begun to i...
Neural Networks, Computer Signal-To-Noise Ratio Software Image Processing, Computer-Assisted
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DANTE: Deep alternations for training neural networks.

Neural networks : the official journal of the International Neural Network Society Jul 28, 2020
We present DANTE, a novel method for training neural networks using the alternating minimization principle. DANTE provides an alternate perspective to traditional gradient-based backpropagation techniques commonly used to train deep networks. It util...
Software Neural Networks, Computer
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Predicting protein model correctness in Coot using machine learning.

Acta crystallographica. Section D, Structural biology Jul 27, 2020
Manually identifying and correcting errors in protein models can be a slow process, but improvements in validation tools and automated model-building software can contribute to reducing this burden. This article presents a new correctness score that ...
Proteins Models, Molecular Protein Conformation Crystallography, X-Ray Machine Learning Software
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lncRNA_Mdeep: An Alignment-Free Predictor for Distinguishing Long Non-Coding RNAs from Protein-Coding Transcripts by Multimodal Deep Learning.

International journal of molecular sciences Jul 23, 2020
Long non-coding RNAs (lncRNAs) play crucial roles in diverse biological processes and human complex diseases. Distinguishing lncRNAs from protein-coding transcripts is a fundamental step for analyzing the lncRNA functional mechanism. However, the exp...
RNA, Long Noncoding Databases, Nucleic Acid Deep Learning Mice Software Animals Humans
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IoT Architecture for Smart Control of an Exoskeleton Robot in Rehabilitation by Using a Natural User Interface Based on Gestures.

Journal of medical systems Jul 23, 2020
This paper describes a system for allowing a therapist to record specific motions, as a part of a rehabilitation program, mainly aimed at the elderly people, by using a Natural User Interface based on gestures. Motions are sent to an exoskeleton robo...
Robotics Exoskeleton Device Gestures Lower Extremity Software Aged Humans
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Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information.

PloS one Jul 23, 2020
With advances in sequencing technology, a vast amount of genomic sequence information has become available. However, annotating biological functions particularly of non-protein-coding regions in genome sequences without experiments is still a challen...
Mice Regulatory Sequences, Nucleic Acid Genomics Software DNA Animals Sequence Analysis, DNA Humans Genome Neural Networks, Computer
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