AIMC Topic: Software

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MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies.

Journal of biomedical informatics
BACKGROUND: One of the major concerns of the biomedical community is the increasing prevalence of antimicrobial resistant microorganisms. Recent findings show that the diversification of colony morphology may be indicative of the expression of virule...

Identification of active transcriptional regulatory elements from GRO-seq data.

Nature methods
Modifications to the global run-on and sequencing (GRO-seq) protocol that enrich for 5'-capped RNAs can be used to reveal active transcriptional regulatory elements (TREs) with high accuracy. Here, we introduce discriminative regulatory-element detec...

A linear-RBF multikernel SVM to classify big text corpora.

BioMed research international
Support vector machine (SVM) is a powerful technique for classification. However, SVM is not suitable for classification of large datasets or text corpora, because the training complexity of SVMs is highly dependent on the input size. Recent developm...

The prediction in computer color matching of dentistry based on GA+BP neural network.

Computational and mathematical methods in medicine
Although the use of computer color matching can reduce the influence of subjective factors by technicians, matching the color of a natural tooth with a ceramic restoration is still one of the most challenging topics in esthetic prosthodontics. Back p...

Clustering molecular dynamics trajectories for optimizing docking experiments.

Computational intelligence and neuroscience
Molecular dynamics simulations of protein receptors have become an attractive tool for rational drug discovery. However, the high computational cost of employing molecular dynamics trajectories in virtual screening of large repositories threats the f...

miRBoost: boosting support vector machines for microRNA precursor classification.

RNA (New York, N.Y.)
Identification of microRNAs (miRNAs) is an important step toward understanding post-transcriptional gene regulation and miRNA-related pathology. Difficulties in identifying miRNAs through experimental techniques combined with the huge amount of data ...

GRYFUN: a web application for GO term annotation visualization and analysis in protein sets.

PloS one
Functional context for biological sequence is provided in the form of annotations. However, within a group of similar sequences there can be annotation heterogeneity in terms of coverage and specificity. This in turn can introduce issues regarding th...

Prediction and analysis of quorum sensing peptides based on sequence features.

PloS one
Quorum sensing peptides (QSPs) are the signaling molecules used by the Gram-positive bacteria in orchestrating cell-to-cell communication. In spite of their enormous importance in signaling process, their detailed bioinformatics analysis is lacking. ...

Evaluating the usability of an interactive, bi-lingual, touchscreen-enabled breastfeeding educational programme: application of Nielson's heuristics.

Journal of innovation in health informatics
The study purpose was to conduct heuristic evaluation of an interactive, bilingual touchscreen-enabled breastfeeding educational programme for Hispanic women living in rural settings in Nebraska. Three raters conducted the evaluation during May 2013 ...