AIMC Topic: Software

Clear Filters Showing 3451 to 3460 of 3675 articles

SV-RCNet: Workflow Recognition From Surgical Videos Using Recurrent Convolutional Network.

IEEE transactions on medical imaging
We propose an analysis of surgical videos that is based on a novel recurrent convolutional network (SV-RCNet), specifically for automatic workflow recognition from surgical videos online, which is a key component for developing the context-aware comp...

Deep learning of genomic variation and regulatory network data.

Human molecular genetics
The human genome is now investigated through high-throughput functional assays, and through the generation of population genomic data. These advances support the identification of functional genetic variants and the prediction of traits (e.g. deleter...

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

GigaScience
Sequencing by translocating DNA fragments through an array of nanopores is a rapidly maturing technology that offers faster and cheaper sequencing than other approaches. However, accurately deciphering the DNA sequence from the noisy and complex elec...

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Bioinformatics (Oxford, England)
MOTIVATION: Best performing named entity recognition (NER) methods for biomedical literature are based on hand-crafted features or task-specific rules, which are costly to produce and difficult to generalize to other corpora. End-to-end neural networ...

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning.

Bioinformatics (Oxford, England)
MOTIVATION: While drug combination therapies are a well-established concept in cancer treatment, identifying novel synergistic combinations is challenging due to the size of combinatorial space. However, computational approaches have emerged as a tim...

pLoc-mHum: predict subcellular localization of multi-location human proteins via general PseAAC to winnow out the crucial GO information.

Bioinformatics (Oxford, England)
MOTIVATION: For in-depth understanding the functions of proteins in a cell, the knowledge of their subcellular localization is indispensable. The current study is focused on human protein subcellular location prediction based on the sequence informat...

How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.

Briefings in bioinformatics
We present a rationale for expanding the presence of the Lisp family of programming languages in bioinformatics and computational biology research. Put simply, Lisp-family languages enable programmers to more quickly write programs that run faster th...

Post hoc support vector machine learning for impedimetric biosensors based on weak protein-ligand interactions.

The Analyst
Impedimetric biosensors for measuring small molecules based on weak/transient interactions between bioreceptors and target analytes are a challenge for detection electronics, particularly in field studies or in the analysis of complex matrices. Prote...

DeepSF: deep convolutional neural network for mapping protein sequences to folds.

Bioinformatics (Oxford, England)
MOTIVATION: Protein fold recognition is an important problem in structural bioinformatics. Almost all traditional fold recognition methods use sequence (homology) comparison to indirectly predict the fold of a target protein based on the fold of a te...

SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments.

Bioinformatics (Oxford, England)
MOTIVATION: Gene Ontology (GO) terms are frequently used to score alignments between protein-protein interaction (PPI) networks. Methods exist to measure GO similarity between proteins in isolation, but proteins in a network alignment are not isolate...