AIMC Topic: Software

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MyoFInDer: An AI-Based Tool for Myotube Fusion Index Determination.

Tissue engineering. Part A
The fusion index is a key indicator for quantifying the differentiation of a myoblast population, which is often calculated manually. In addition to being time-consuming, manual quantification is also error prone and subjective. Several software tool...

Cracking AlphaFold2: Leveraging the power of artificial intelligence in undergraduate biochemistry curriculums.

PLoS computational biology
AlphaFold2 is an Artificial Intelligence-based program developed to predict the 3D structure of proteins given only their amino acid sequence at atomic resolution. Due to the accuracy and efficiency at which AlphaFold2 can generate 3D structure predi...

NPI-DCGNN: An Accurate Tool for Identifying ncRNA-Protein Interactions Using a Dual-Channel Graph Neural Network.

Journal of computational biology : a journal of computational molecular cell biology
Noncoding RNA (NcRNA)-protein interactions (NPIs) play fundamentally important roles in carrying out cellular activities. Although various predictors based on molecular features and graphs have been published to boost the identification of NPIs, most...

DrugFlow: An AI-Driven One-Stop Platform for Innovative Drug Discovery.

Journal of chemical information and modeling
Artificial intelligence (AI)-aided drug design has demonstrated unprecedented effects on modern drug discovery, but there is still an urgent need for user-friendly interfaces that bridge the gap between these sophisticated tools and scientists, parti...

mACPpred 2.0: Stacked Deep Learning for Anticancer Peptide Prediction with Integrated Spatial and Probabilistic Feature Representations.

Journal of molecular biology
Anticancer peptides (ACPs), naturally occurring molecules with remarkable potential to target and kill cancer cells. However, identifying ACPs based solely from their primary amino acid sequences remains a major hurdle in immunoinformatics. In the pa...

Editorial Commentary: Chat Generative Pre-Trained Transformer (ChatGPT) Provides Misinformed Responses to Medical Questions.

Arthroscopy : the journal of arthroscopic & related surgery : official publication of the Arthroscopy Association of North America and the International Arthroscopy Association
Surgeons have dealt with the negative effects of misinformation from "Dr. Google" since patients started using search engines to seek out medical information. With the advent of natural language processing software such as Chat Generative Pre-Trained...

Evaluation of the accuracy of automated tooth segmentation of intraoral scans using artificial intelligence-based software packages.

American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics
INTRODUCTION: The accuracy of tooth segmentation in intraoral scans is crucial for performing virtual setups and appliance fabrication. Hence, the objective of this study was to estimate and compare the accuracy of automated tooth segmentation genera...

SAnDReS 2.0: Development of machine-learning models to explore the scoring function space.

Journal of computational chemistry
Classical scoring functions may exhibit low accuracy in determining ligand binding affinity for proteins. The availability of both protein-ligand structures and affinity data make it possible to develop machine-learning models focused on specific pro...

Discovery of Antimicrobial Lysins from the "Dark Matter" of Uncharacterized Phages Using Artificial Intelligence.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
The rapid rise of antibiotic resistance and slow discovery of new antibiotics have threatened global health. While novel phage lysins have emerged as potential antibacterial agents, experimental screening methods for novel lysins pose significant cha...

Use of Artificial Intelligence Techniques to Assist Individuals with Physical Disabilities.

Annual review of biomedical engineering
Assistive technologies (AT) enable people with disabilities to perform activities of daily living more independently, have greater access to community and healthcare services, and be more productive performing educational and/or employment tasks. Int...