AI Medical Compendium Journal:
BMC bioinformatics

Showing 81 to 90 of 772 articles

Prediction of anticancer drug sensitivity using an interpretable model guided by deep learning.

BMC bioinformatics
BACKGROUND: The prediction of drug sensitivity plays a crucial role in improving the therapeutic effect of drugs. However, testing the effectiveness of drugs is challenging due to the complex mechanism of drug reactions and the lack of interpretabili...

A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.

BMC bioinformatics
BACKGROUND: RNA sequencing combined with machine learning techniques has provided a modern approach to the molecular classification of cancer. Class predictors, reflecting the disease class, can be constructed for known tissue types using the gene ex...

Assessing the reliability of point mutation as data augmentation for deep learning with genomic data.

BMC bioinformatics
BACKGROUND: Deep neural networks (DNNs) have the potential to revolutionize our understanding and treatment of genetic diseases. An inherent limitation of deep neural networks, however, is their high demand for data during training. To overcome this ...

TEC-miTarget: enhancing microRNA target prediction based on deep learning of ribonucleic acid sequences.

BMC bioinformatics
BACKGROUND: MicroRNAs play a critical role in regulating gene expression by binding to specific target sites within gene transcripts, making the identification of microRNA targets a prominent focus of research. Conventional experimental methods for i...

Drug-Online: an online platform for drug-target interaction, affinity, and binding sites identification using deep learning.

BMC bioinformatics
BACKGROUND: Accurately identifying drug-target interaction (DTI), affinity (DTA), and binding sites (DTS) is crucial for drug screening, repositioning, and design, as well as for understanding the functions of target. Although there are a few online ...

Biomarker discovery with quantum neural networks: a case-study in CTLA4-activation pathways.

BMC bioinformatics
BACKGROUND: Biomarker discovery is a challenging task due to the massive search space. Quantum computing and quantum Artificial Intelligence (quantum AI) can be used to address the computational problem of biomarker discovery from genetic data.

KEGG orthology prediction of bacterial proteins using natural language processing.

BMC bioinformatics
BACKGROUND: The advent of high-throughput technologies has led to an exponential increase in uncharacterized bacterial protein sequences, surpassing the capacity of manual curation. A large number of bacterial protein sequences remain unannotated by ...

GraphKM: machine and deep learning for K prediction of wildtype and mutant enzymes.

BMC bioinformatics
Michaelis constant (K) is one of essential parameters for enzymes kinetics in the fields of protein engineering, enzyme engineering, and synthetic biology. As overwhelming experimental measurements of K are difficult and time-consuming, prediction of...

Utilizing genomic signatures to gain insights into the dynamics of SARS-CoV-2 through Machine and Deep Learning techniques.

BMC bioinformatics
The global spread of the SARS-CoV-2 pandemic, originating in Wuhan, China, has had profound consequences on both health and the economy. Traditional alignment-based phylogenetic tree methods for tracking epidemic dynamics demand substantial computati...

Slideflow: deep learning for digital histopathology with real-time whole-slide visualization.

BMC bioinformatics
Deep learning methods have emerged as powerful tools for analyzing histopathological images, but current methods are often specialized for specific domains and software environments, and few open-source options exist for deploying models in an intera...