AI Medical Compendium Journal:
BMC biology

Showing 11 to 20 of 32 articles

An ensemble deep learning framework for multi-class LncRNA subcellular localization with innovative encoding strategy.

BMC biology
BACKGROUND: Long non-coding RNA (LncRNA) play pivotal roles in various cellular processes, and elucidating their subcellular localization can offer crucial insights into their functional significance. Accurate prediction of lncRNA subcellular localiz...

PharmRL: pharmacophore elucidation with deep geometric reinforcement learning.

BMC biology
BACKGROUND: Molecular interactions between proteins and their ligands are important for drug design. A pharmacophore consists of favorable molecular interactions in a protein binding site and can be utilized for virtual screening. Pharmacophores are ...

Drug-target interaction prediction with collaborative contrastive learning and adaptive self-paced sampling strategy.

BMC biology
BACKGROUND: Drug-target interaction (DTI) prediction plays a pivotal role in drug discovery and drug repositioning, enabling the identification of potential drug candidates. However, most previous approaches often do not fully utilize the complementa...

Preventing illegal seafood trade using machine-learning assisted microbiome analysis.

BMC biology
BACKGROUND: Seafood is increasingly traded worldwide, but its supply chain is particularly prone to frauds. To increase consumer confidence, prevent illegal trade, and provide independent validation for eco-labelling, accurate tools for seafood trace...

MvGraphDTA: multi-view-based graph deep model for drug-target affinity prediction by introducing the graphs and line graphs.

BMC biology
BACKGROUND: Accurately identifying drug-target affinity (DTA) plays a pivotal role in drug screening, design, and repurposing in pharmaceutical industry. It not only reduces the time, labor, and economic costs associated with biological experiments b...

Morphology-based deep learning enables accurate detection of senescence in mesenchymal stem cell cultures.

BMC biology
BACKGROUND: Cell senescence is a sign of aging and plays a significant role in the pathogenesis of age-related disorders. For cell therapy, senescence may compromise the quality and efficacy of cells, posing potential safety risks. Mesenchymal stem c...

A systematic review of the development and application of home cage monitoring in laboratory mice and rats.

BMC biology
BACKGROUND: Traditionally, in biomedical animal research, laboratory rodents are individually examined in test apparatuses outside of their home cages at selected time points. However, the outcome of such tests can be influenced by various factors an...

m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation.

BMC biology
BACKGROUND: RNA 5-methyluridine (m5U) modifications are obtained by methylation at the C position of uridine catalyzed by pyrimidine methylation transferase, which is related to the development of human diseases. Accurate identification of m5U modifi...

Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks.

BMC biology
BACKGROUND: Deep-learning-based image segmentation models are required for accurate processing of high-throughput timelapse imaging data of bacterial cells. However, the performance of any such model strictly depends on the quality and quantity of tr...

Deep learning-based behavioral profiling of rodent stroke recovery.

BMC biology
BACKGROUND: Stroke research heavily relies on rodent behavior when assessing underlying disease mechanisms and treatment efficacy. Although functional motor recovery is considered the primary targeted outcome, tests in rodents are still poorly reprod...