AI Medical Compendium Journal:
Computational biology and chemistry

Showing 1 to 10 of 191 articles

Machine learning and explainable artificial intelligence reveals the MicroRNAs associated with survival of head and neck squamous cell carcinoma patients.

Computational biology and chemistry
Dysregulated microRNAs (miRNAs) play a significant role in cancer development and metastasis. In literature, miRNAs have been used for the survival prediction of different types of cancers using AI. Although AI is useful for diagnosis and prognosis p...

Towards automated and reliable lung cancer detection in histopathological images using DY-FSPAN: A feature-summarized pyramidal attention network for explainable AI.

Computational biology and chemistry
Medical image classification is critical for accurate disease diagnosis, necessitating models that balance performance and interpretability. This study presents Dilated Y-Block-based Feature Summarized Pyramidal Attention Network (DY-FSPAN), a deep l...

Machine learning-driven discovery of antimicrobial peptides targeting the GAPDH-TPI protein-protein interaction in Schistosoma mansoni for novel antischistosomal therapeutics.

Computational biology and chemistry
Schistosomiasis, caused by Schistosoma mansoni, remains a significant public health burden, particularly in endemic regions with limited access to effective treatment. The emergence of resistance to praziquantel necessitates the urgent discovery of n...

NABP-LSTM-Att: Nanobody-Antigen binding prediction using bidirectional LSTM and soft attention mechanism.

Computational biology and chemistry
In vertebrates, antibody-mediated immunity is a vital component of the immune system, and antibodies have become a rapidly expanding class of therapeutic agents. Nanobodies, a distinct type of antibody, have recently emerged as a stable and cost-effe...

iEnhancer-DS: Attention-based improved densenet for identifying enhancers and their strength.

Computational biology and chemistry
Enhancers are short DNA fragments that enhance gene expression by binding to transcription factors. Accurately identifying enhancers and their strength is crucial for understanding gene regulation mechanisms. However, traditional enhancer sequencing ...

pACPs-DNN: Predicting anticancer peptides using novel peptide transformation into evolutionary and structure matrix-based images with self-attention deep learning model.

Computational biology and chemistry
Globally, cancer remains a major health challenge due to its high mortality rates. Traditional experimental approaches and therapies are resource-intensive and often cause significant side effects. Anticancer peptides (ACPs) have emerged as alternati...

Interpretable lung cancer risk prediction using ensemble learning and XAI based on lifestyle and demographic data.

Computational biology and chemistry
Lung cancer is a leading cause of cancer-related death worldwide. The early and accurate detection of lung cancer is crucial for improving patient outcomes. Traditional predictive models often lack the accuracy and interpretability required in clinic...

Lung cancer detection and classification using optimized CNN features and Squeeze-Inception-ResNeXt model.

Computational biology and chemistry
Lung cancer, with its high mortality rate, is one of the deadliest diseases globally. The alarming increase in lung cancer deaths and its widespread prevalence have led to the development of various cancer control research and early detection methods...

In silico discovery of novel compounds for FAK activation using virtual screening, AI-based prediction, and molecular dynamics.

Computational biology and chemistry
Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase that plays a crucial role in cell proliferation, migration, and signal transduction. FAK is overexpressed in metastatic and advanced-stage cancers, where it is considered a key kinase in c...

Drug-drug interaction prediction based on graph contrastive learning and dual-view fusion.

Computational biology and chemistry
Drug-drug interaction (DDI) is important in drug research and are one of the major causes of morbidity and mortality. The deep learning methods can automatically extract drug features from molecular graphs or drug-related networks, which improves the...