AI Medical Compendium Topic:
Biological Ontologies

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An Ontology-Based Approach to Estimate the Frequency of Rare Diseases in Narrative-Text Radiology Reports.

Studies in health technology and informatics
This study sought to use ontology-based knowledge to identify patients with rare diseases and to estimate the frequency of those diseases in a large database of radiology reports. Natural language processing methods were applied to 12,377,743 narrari...

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation.

Studies in health technology and informatics
We report on a study of our custom Hootation software for the purposes of assessing its ability to produce clear and accurate natural language phrases from axioms embedded in three biomedical ontologies. Using multiple domain experts and three discre...

Processual Reasoning over Sequences of Situations in Endoscopic Surgery.

Studies in health technology and informatics
Minimally invasive surgery is a highly complex and technically demanding alternative to open surgery. Surgical procedures based on this method are characterized by small incisions and allow for a fast recovery of the patient. Such techniques are chal...

Light-Weighted Automatic Import of Standardized Ontologies into the Content Management System Drupal.

Studies in health technology and informatics
The amount of ontologies, which are utilizable for widespread domains, is growing steadily. BioPortal alone, embraces over 500 published ontologies with nearly 8 million classes. In contrast, the vast informative content of these ontologies is only d...

Expert2OWL: A Methodology for Pattern-Based Ontology Development.

Studies in health technology and informatics
The formalization of expert knowledge enables a broad spectrum of applications employing ontologies as underlying technology. These include eLearning, Semantic Web and expert systems. However, the manual construction of such ontologies is time-consum...

Technical Environment for Developing the SNIK Ontology of Information Management in Hospitals.

Studies in health technology and informatics
The SNIK project converts textbooks about information management in hospitals to a domain ontology that provides a shared vocabulary for institutions to model and integrate processes, data and infrastructure. To accommodate user groups with different...

Relational Algebra in Spatial Decision Support Systems Ontologies.

Studies in health technology and informatics
Decision Support Systems (DSS) is a powerful tool, for facilitates researchers to choose the correct decision based on their final results. Especially in medical cases where doctors could use these systems, to overcome the problem with the clinical m...

Pitfalls of Ontology in Medicine.

Studies in health technology and informatics
Much research has been done in the last few decades in clinical research, medicine, life sciences, etc. leading to an exponential increase in the generation of data. Managing this vast information not only requires integration of the data, but also a...

Semantic Technologies and Bio-Ontologies.

Methods in molecular biology (Clifton, N.J.)
As information available through data repositories constantly grows, the need for automated mechanisms for linking, querying, and sharing data has become a relevant factor both in research and industry. This situation is more evident in research fiel...

HL7 FHIR: Ontological Reinterpretation of Medication Resources.

Studies in health technology and informatics
"A solid ontology-based analysis with a rigorous formal mapping for correctness" is one of the ten reasons why the HL7 standard Fast Healthcare Interoperability Resources (FHIR) is advertised to be better than other standards for EHR interoperability...