AIMC Topic: Deep Learning

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Improved Predicting of The Sequence Specificities of RNA Binding Proteins by Deep Learning.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
RNA-binding proteins (RBPs) have a significant role in various regulatory tasks. However, the mechanism by which RBPs identify the subsequence target RNAs is still not clear. In recent years, several machine and deep learning-based computational mode...
Conserved Sequence Deep Learning Amino Acid Motifs Sequence Analysis, Protein Computational Biology RNA-Binding Proteins Humans Animals
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Multi-Label Classification Scheme Based on Local Regression for Retinal Vessel Segmentation.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
Segmenting small retinal vessels with width less than 2 pixels in fundus images is a challenging task. In this paper, in order to effectively segment the vessels, especially the narrow parts, we propose a local regression scheme to enhance the narrow...
Humans Retinal Vessels Algorithms Image Processing, Computer-Assisted Neural Networks, Computer Computational Biology Deep Learning Regression Analysis
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Lesion Segmentation in Ultrasound Using Semi-Pixel-Wise Cycle Generative Adversarial Nets.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
Breast cancer is the most common invasive cancer with the highest cancer occurrence in females. Handheld ultrasound is one of the most efficient ways to identify and diagnose the breast cancer. The area and the shape information of a lesion is very h...
Breast Image Interpretation, Computer-Assisted Deep Learning Ultrasonography, Mammary Algorithms Humans Female Breast Neoplasms
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Drug-Target Interaction Prediction: End-to-End Deep Learning Approach.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
The discovery of potential Drug-Target Interactions (DTIs) is a determining step in the drug discovery and repositioning process, as the effectiveness of the currently available antibiotic treatment is declining. Although putting efforts on the tradi...
Neural Networks, Computer Machine Learning Drug Discovery Deep Learning Algorithms Humans Drug Repositioning Computational Biology Pharmaceutical Preparations Proteins Amino Acid Sequence
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A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based Information.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
Knowledge of protein functions plays an important role in biology and medicine. With the rapid development of high-throughput technologies, a huge number of proteins have been discovered. However, there are a great number of proteins without function...
Molecular Sequence Annotation Gene Ontology Proteins Amino Acid Sequence Software Algorithms Protein Interaction Maps Computational Biology Deep Learning
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Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM Profiles.

IEEE/ACM transactions on computational biology and bioinformatics Dec 8, 2021
Flavin mono-nucleotides (FMNs) are cofactors that hold responsibility for carrying and transferring electrons in the electron transport chain stage of cellular respiration. Without being facilitated by FMNs, energy production is stagnant due to the i...
Position-Specific Scoring Matrices Flavin Mononucleotide Algorithms Deep Learning Binding Sites Electron Transport Computational Biology Neural Networks, Computer
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Deep learning nomogram for predicting lymph node metastasis using computed tomography image in cervical cancer.

Acta radiologica (Stockholm, Sweden : 1987) Dec 7, 2021
BACKGROUND: Deep learning (DL) has been used on medical images to grade, differentiate, and predict prognosis in many tumors.
Retrospective Studies Tomography, X-Ray Computed Female Humans Lymph Nodes Nomograms Lymphatic Metastasis Uterine Cervical Neoplasms Deep Learning
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Deep learning-based attenuation map generation and correction; could it be useful clinically?

Journal of nuclear cardiology : official publication of the American Society of Nuclear Cardiology Dec 7, 2021
Image Processing, Computer-Assisted Magnetic Resonance Imaging Positron-Emission Tomography Humans Deep Learning
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Analysing the effect of robotic gait on lower extremity muscles and classification by using deep learning.

Computer methods in biomechanics and biomedical engineering Dec 7, 2021
Robotic gait training helps the nervous system recover and strengthen weak muscle groups. Many studies in the literature show that applying robotic gait rehabilitation to patients with neurological disorders such as Multiple Sclerosis (MS), Stroke an...
Muscles Humans Deep Learning Robotic Surgical Procedures Gait Lower Extremity
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Deep Learning Reconstruction Enables Highly Accelerated Biparametric MR Imaging of the Prostate.

Journal of magnetic resonance imaging : JMRI Dec 7, 2021
BACKGROUND: Early diagnosis and treatment of prostate cancer (PCa) can be curative; however, prostate-specific antigen is a suboptimal screening test for clinically significant PCa. While prostate magnetic resonance imaging (MRI) has demonstrated val...
Humans Retrospective Studies Male Prostatic Neoplasms Prostate Diffusion Magnetic Resonance Imaging Deep Learning Magnetic Resonance Imaging
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