AIMC Topic: Deep Learning

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Deep learning embedder method and tool for mass spectra similarity search.

Journal of proteomics
Spectral similarity calculation is widely used in protein identification tools and mass spectra clustering algorithms while comparing theoretical or experimental spectra. The performance of the spectral similarity calculation plays an important role ...

Mid-term prediction of at-fault crash driver frequency using fusion deep learning with city-level traffic violation data.

Accident; analysis and prevention
Traffic violations and improper driving are behaviors that primarily contribute to traffic crashes. This study aimed to develop effective approaches for predicting at-fault crash driver frequency using only city-level traffic enforcement predictors. ...

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides.

Scientific reports
Dietary antioxidants are an important preservative in food and have been suggested to help in disease prevention. With consumer demands for less synthetic and safer additives in food products, the food industry is searching for antioxidants that can ...

Detection of Hate Speech in COVID-19-Related Tweets in the Arab Region: Deep Learning and Topic Modeling Approach.

Journal of medical Internet research
BACKGROUND: The massive scale of social media platforms requires an automatic solution for detecting hate speech. These automatic solutions will help reduce the need for manual analysis of content. Most previous literature has cast the hate speech de...

Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy.

PloS one
The accurate segmentation and tracking of cells in microscopy image sequences is an important task in biomedical research, e.g., for studying the development of tissues, organs or entire organisms. However, the segmentation of touching cells in image...

Ensembling of Gene Clusters Utilizing Deep Learning and Protein-Protein Interaction Information.

IEEE/ACM transactions on computational biology and bioinformatics
Cluster ensemble techniques aim to combine the outputs of multiple clustering algorithms to obtain a single consensus partitioning. The current paper reports about the development of a cluster ensemble based technique combining the concepts of multio...

Bioimage-Based Prediction of Protein Subcellular Location in Human Tissue with Ensemble Features and Deep Networks.

IEEE/ACM transactions on computational biology and bioinformatics
Prediction of protein subcellular location has currently become a hot topic because it has been proven to be useful for understanding both the disease mechanisms and novel drug design. With the rapid development of automated microscopic imaging techn...

Deep Learning for Automated Feature Discovery and Classification of Sleep Stages.

IEEE/ACM transactions on computational biology and bioinformatics
Convolutional neural networks (CNN) have demonstrated state-of-the-art classification results in image categorization, but have received comparatively little attention for classification of one-dimensional physiological signals. We design a deep CNN ...

Deep Learning Benchmarks on L1000 Gene Expression Data.

IEEE/ACM transactions on computational biology and bioinformatics
Gene expression data can offer deep, physiological insights beyond the static coding of the genome alone. We believe that realizing this potential requires specialized, high-capacity machine learning methods capable of using underlying biological str...