AIMC Topic: Deep Learning

Clear Filters Showing 26731 to 26740 of 28423 articles

circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier.

Briefings in bioinformatics
Circular RNAs (circRNAs) generally bind to RNA-binding proteins (RBPs) to play an important role in the regulation of autoimmune diseases. Thus, it is crucial to study the binding sites of RBPs on circRNAs. Although many methods, including traditiona...

Deep learning in retrosynthesis planning: datasets, models and tools.

Briefings in bioinformatics
In recent years, synthesizing drugs powered by artificial intelligence has brought great convenience to society. Since retrosynthetic analysis occupies an essential position in synthetic chemistry, it has received broad attention from researchers. In...

High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning.

Briefings in bioinformatics
Single-cell RNA sequencing (scRNA-seq) technologies have been heavily developed to probe gene expression profiles at single-cell resolution. Deep imputation methods have been proposed to address the related computational challenges (e.g. the gene spa...

Ensemble modeling with machine learning and deep learning to provide interpretable generalized rules for classifying CNS drugs with high prediction power.

Briefings in bioinformatics
The trade-off between a machine learning (ML) and deep learning (DL) model's predictability and its interpretability has been a rising concern in central nervous system-related quantitative structure-activity relationship (CNS-QSAR) analysis. Many st...

How much can deep learning improve prediction of the responses to drugs in cancer cell lines?

Briefings in bioinformatics
The drug response prediction problem arises from personalized medicine and drug discovery. Deep neural networks have been applied to the multi-omics data being available for over 1000 cancer cell lines and tissues for better drug response prediction....

DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifs.

Briefings in bioinformatics
The cooperativity of transcription factors (TFs) is a widespread phenomenon in the gene regulation system. However, the interaction patterns between TF binding motifs remain elusive. The recent high-throughput assays, CAP-SELEX, have identified over ...

DeepLncLoc: a deep learning framework for long non-coding RNA subcellular localization prediction based on subsequence embedding.

Briefings in bioinformatics
Long non-coding RNAs (lncRNAs) are a class of RNA molecules with more than 200 nucleotides. A growing amount of evidence reveals that subcellular localization of lncRNAs can provide valuable insights into their biological functions. Existing computat...

A general optimization protocol for molecular property prediction using a deep learning network.

Briefings in bioinformatics
The key to generating the best deep learning model for predicting molecular property is to test and apply various optimization methods. While individual optimization methods from different past works outside the pharmaceutical domain each succeeded i...

A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data.

Briefings in bioinformatics
The emergence of single cell RNA sequencing has facilitated the studied of genomes, transcriptomes and proteomes. As available single-cell RNA-seq datasets are released continuously, one of the major challenges facing traditional RNA analysis tools i...

A Deep Learning Program to Predict Acute Kidney Injury.

Studies in health technology and informatics
Acute kidney injury is a dangerous and sometime fatal clinical situation, which can cause irreversible damage. If we can predict it earlier and make appropriate prevention before its outbreak, kidney injury could be avoided. One challenge of early re...