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DNA

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SeqEnhDL: sequence-based classification of cell type-specific enhancers using deep learning models.

BMC research notes
OBJECTIVE: To address the challenge of computational identification of cell type-specific regulatory elements on a genome-wide scale.

Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species.

PLoS computational biology
N6-methyladenine (6mA) is an important DNA modification form associated with a wide range of biological processes. Identifying accurately 6mA sites on a genomic scale is crucial for under-standing of 6mA's biological functions. However, the existing ...

Discovering and Visualizing Disease-Specific Electrocardiogram Features Using Deep Learning: Proof-of-Concept in Phospholamban Gene Mutation Carriers.

Circulation. Arrhythmia and electrophysiology
BACKGROUND: ECG interpretation requires expertise and is mostly based on physician recognition of specific patterns, which may be challenging in rare cardiac diseases. Deep neural networks (DNNs) can discover complex features in ECGs and may facilita...

Progress in Nanorobotics for Advancing Biomedicine.

IEEE transactions on bio-medical engineering
Nanorobotics, which has long been a fantasy in the realm of science fiction, is now a reality due to the considerable developments in diverse fields including chemistry, materials, physics, information and nanotechnology in the past decades. Not only...

Predicting the DNA Conductance Using a Deep Feedforward Neural Network Model.

Journal of chemical information and modeling
Double-stranded DNA (dsDNA) has been established as an efficient medium for charge migration, bringing it to the forefront of the field of molecular electronics and biological research. The charge migration rate is controlled by the electronic coupli...

A machine learning toolkit for genetic engineering attribution to facilitate biosecurity.

Nature communications
The promise of biotechnology is tempered by its potential for accidental or deliberate misuse. Reliably identifying telltale signatures characteristic to different genetic designers, termed 'genetic engineering attribution', would deter misuse, yet i...

Deep learning based DNA:RNA triplex forming potential prediction.

BMC bioinformatics
BACKGROUND: Long non-coding RNAs (lncRNAs) can exert functions via forming triplex with DNA. The current methods in predicting the triplex formation mainly rely on mathematic statistic according to the base paring rules. However, these methods have t...

A DNA-Based Intelligent Expert System for Personalised Skin-Health Recommendations.

IEEE journal of biomedical and health informatics
Intensive attention on personalised skin-health solutions is on account of incomparable love of skin and an urgent need for effective treatment. In the meanwhile, people have great expectations on how to utilise genetic knowledge of our body to provi...

Transfer learning enables prediction of CYP2D6 haplotype function.

PLoS computational biology
Cytochrome P450 2D6 (CYP2D6) is a highly polymorphic gene whose protein product metabolizes more than 20% of clinically used drugs. Genetic variations in CYP2D6 are responsible for interindividual heterogeneity in drug response that can lead to drug ...

Implementing logical inference based on DNA assembly.

Bio Systems
Algorithms and information processing, fundamental to biological system, are an essential aspect of many elementary physical phenomena, such as molecular self-assembly. Self-assembly system has been proved to be capable of performing many logic opera...