AI Medical Compendium Topic

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Genes, Viral

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SPRENO: a BioC module for identifying organism terms in figure captions.

Database : the journal of biological databases and curation
Recent advances in biological research reveal that the majority of the experiments strive for comprehensive exploration of the biological system rather than targeting specific biological entities. The qualitative and quantitative findings of the inve...

Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents.

Genome biology and evolution
Many of the sequenced bacterial and archaeal genomes encode regions of viral provenance. Yet, not all of these regions encode bona fide viruses. Gene transfer agents (GTAs) are thought to be former viruses that are now maintained in genomes of some b...

IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis.

PLoS computational biology
During these days of global emergency for the COVID-19 disease outbreak, there is an urgency to share reliable information able to help worldwide life scientists to get better insights and make sense of the large amount of data currently available. I...

Network machine learning maps phytochemically rich "Hyperfoods" to fight COVID-19.

Human genomics
In this paper, we introduce a network machine learning method to identify potential bioactive anti-COVID-19 molecules in foods based on their capacity to target the SARS-CoV-2-host gene-gene (protein-protein) interactome. Our analyses were performed ...

Using machine learning and big data to explore the drug resistance landscape in HIV.

PLoS computational biology
Drug resistance mutations (DRMs) appear in HIV under treatment pressure. DRMs are commonly transmitted to naive patients. The standard approach to reveal new DRMs is to test for significant frequency differences of mutations between treated and naive...