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Knowledge Bases

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The most cited and co-cited COVID-19 articles: Knowledge base for rehabilitation team members.

Work (Reading, Mass.)
BACKGROUND: The COVID-19 outbreak pandemic is a situation without a tested action plan. Rehabilitation team members have been called for duty with new responsibilities in addition to their conventional roles in the healthcare system. The infectious d...

The Genome3D Consortium for Structural Annotations of Selected Model Organisms.

Methods in molecular biology (Clifton, N.J.)
Genome3D consortium is a collaborative project involving protein structure prediction and annotation resources developed by six world-leading structural bioinformatics groups, based in the United Kingdom (namely Blundell, Murzin, Gough, Sternberg, Or...

CHDGKB: a knowledgebase for systematic understanding of genetic variations associated with non-syndromic congenital heart disease.

Database : the journal of biological databases and curation
Congenital heart disease (CHD) is one of the most common birth defects, with complex genetic and environmental etiologies. The reports of genetic variation associated with CHD have increased dramatically in recent years due to the revolutionary devel...

UPCLASS: a deep learning-based classifier for UniProtKB entry publications.

Database : the journal of biological databases and curation
In the UniProt Knowledgebase (UniProtKB), publications providing evidence for a specific protein annotation entry are organized across different categories, such as function, interaction and expression, based on the type of data they contain. To prov...

Structured reviews for data and knowledge-driven research.

Database : the journal of biological databases and curation
UNLABELLED: Hypothesis generation is a critical step in research and a cornerstone in the rare disease field. Research is most efficient when those hypotheses are based on the entirety of knowledge known to date. Systematic review articles are common...

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.

Database : the journal of biological databases and curation
Biological knowledgebases rely on expert biocuration of the research literature to maintain up-to-date collections of data organized in machine-readable form. To enter information into knowledgebases, curators need to follow three steps: (i) identify...

Developing a Prototype Knowledge-Based System for Diagnosis and Treatment of Diabetes Using Data Mining Techniques.

Ethiopian journal of health sciences
BACKGROUND: Diabetes is a disease that affects the body's ability to produce or use insulin. A total of 425 million people are suffering from diabetes in the world. Of this, more than 16 million people live in the Africa Region, which is estimated to...

Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Detecting adverse drug events (ADEs) and medications related information in clinical notes is important for both hospital medical care and medical research. We describe our clinical natural language processing (NLP) system to automatically...

mirtronDB: a mirtron knowledge base.

Bioinformatics (Oxford, England)
MOTIVATION: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtr...

[From genome analysis to construction of an integrated omics knowledgebase for crops].

Yi chuan = Hereditas
The advances in high-throughput technologies have enabled high-speed accumulation of omics data, which contain a large amount of genetic variations and their functional information. The integration and deep utilization of those data will be a long-te...