AI Medical Compendium Topic

Explore the latest research on artificial intelligence and machine learning in medicine.

Lysine

Showing 21 to 30 of 54 articles

Clear Filters

Characterization and Identification of Lysine Succinylation Sites based on Deep Learning Method.

Scientific reports
Succinylation is a type of protein post-translational modification (PTM), which can play important roles in a variety of cellular processes. Due to an increasing number of site-specific succinylated peptides obtained from high-throughput mass spectro...

HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction.

Genomics, proteomics & bioinformatics
As an important protein acylation modification, lysine succinylation (Ksucc) is involved in diverse biological processes, and participates in human tumorigenesis. Here, we collected 26,243 non-redundant known Ksucc sites from 13 species as the benchm...

DeepSuccinylSite: a deep learning based approach for protein succinylation site prediction.

BMC bioinformatics
BACKGROUND: Protein succinylation has recently emerged as an important and common post-translation modification (PTM) that occurs on lysine residues. Succinylation is notable both in its size (e.g., at 100 Da, it is one of the larger chemical PTMs) a...

Accurate prediction of species-specific 2-hydroxyisobutyrylation sites based on machine learning frameworks.

Analytical biochemistry
Lysine 2-hydroxyisobutyrylation (K) is a newly discovered post-translational modification (PTM) across eukaryotes and prokaryotes in recent years, which plays a significant role in diverse cellular functions. Accurate prediction of K sites is a first...

Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation.

Briefings in bioinformatics
Protein lysine acetylation regulation is an important molecular mechanism for regulating cellular processes and plays critical physiological and pathological roles in cancers and diseases. Although massive acetylation sites have been identified throu...

PupStruct: Prediction of Pupylated Lysine Residues Using Structural Properties of Amino Acids.

Genes
Post-translational modification (PTM) is a critical biological reaction which adds to the diversification of the proteome. With numerous known modifications being studied, pupylation has gained focus in the scientific community due to its significant...

RAM-PGK: Prediction of Lysine Phosphoglycerylation Based on Residue Adjacency Matrix.

Genes
BACKGROUND: Post-translational modification (PTM) is a biological process that is associated with the modification of proteome, which results in the alteration of normal cell biology and pathogenesis. There have been numerous PTM reports in recent ye...

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method.

Briefings in bioinformatics
As a newly discovered protein posttranslational modification, histone lysine crotonylation (Kcr) involved in cellular regulation and human diseases. Various proteomics technologies have been developed to detect Kcr sites. However, experimental approa...

Prediction of lysine formylation sites using support vector machine based on the sample selection from majority classes and synthetic minority over-sampling techniques.

Biochimie
Lysine formylation is a newly discovered and mostly interested type of post-translational modification (PTM) that is generally found on core and linker histone proteins of prokaryote and eukaryote and plays various important roles on the regulation o...

BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models.

Bioinformatics (Oxford, England)
MOTIVATION: As one of the most important post-translational modifications (PTMs), protein lysine crotonylation (Kcr) has attracted wide attention, which involves in important physiological activities, such as cell differentiation and metabolism. Howe...