AIMC Topic: Machine Learning

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Predicting Oxidation Potentials with DFT-Driven Machine Learning.

Journal of chemical information and modeling
We introduce OxPot, a comprehensive open-access data set comprising over 15 thousand chemically diverse organic molecules. Leveraging the precision of DFT-derived highest occupied molecular orbital energies (), OxPot serves as a robust platform for a...

Band Gap and Reorganization Energy Prediction of Conducting Polymers by the Integration of Machine Learning and Density Functional Theory.

Journal of chemical information and modeling
The performance and reliability of machine learning (ML)-quantitative structure-property relationship (QSPR) models depend on the quality, size, and diversity of the data set used for model training. In this study, we manually curated a large-scale d...

Active Learning-Guided Hit Optimization for the Leucine-Rich Repeat Kinase 2 WDR Domain Based on In Silico Ligand-Binding Affinities.

Journal of chemical information and modeling
The leucine-rich repeat kinase 2 (LRRK2) is the most mutated gene in familial Parkinson's disease, and its mutations lead to pathogenic hallmarks of the disease. The LRRK2 WDR domain is an understudied drug target for Parkinson's disease, with no kno...

Comprehensive Drug-Likeness Prediction Using a Pretrained Transformer Model and Multitask Learning.

Journal of chemical information and modeling
Drug-likeness is essential in drug discovery, indicating the potential of a compound to become a successful therapeutic. However, existing rule-based and machine learning methods are limited by their reliance on hand-crafted features, poor generaliza...

Machine Learning Pipeline for Molecular Property Prediction Using ChemXploreML.

Journal of chemical information and modeling
We present ChemXploreML, a modular desktop application designed for machine learning-based molecular property prediction. The framework's flexible architecture allows integration of any molecular embedding technique with modern machine learning algor...

Improved Machine Learning Predictions of EC50s Using Uncertainty Estimation from Dose-Response Data.

Journal of chemical information and modeling
In early-stage drug design, machine learning models often rely on compressed representations of data, where raw experimental results are distilled into a single metric per molecule through curve fitting. This process discards valuable information abo...

ABP-Xplorer: A Machine Learning Approach for Prediction of Antibacterial Peptides Targeting -tRNA-Methyltransferase (TrmD).

Journal of chemical information and modeling
(MAB) infections pose a significant treatment challenge due to their intrinsic resistance to antibiotics, requiring prolonged multidrug regimens with limited success and frequent relapses. tRNA (m1G37) methyltransferase (TrmD), an enzyme essential f...

Heterogeneous Graph Contrastive Learning with Graph Diffusion for Drug Repositioning.

Journal of chemical information and modeling
Drug repositioning, which identifies novel therapeutic applications for existing drugs, offers a cost-effective alternative to traditional drug development. However, effectively capturing the complex relationships between drugs and diseases remains c...

Comparison of spatial prediction models from Machine Learning of cholangiocarcinoma incidence in Thailand.

BMC public health
BACKGROUND: Cholangiocarcinoma (CCA) poses a significant public health challenge in Thailand, with notably high incidence rates. This study aimed to compare the performance of spatial prediction models using Machine Learning techniques to analyze the...

Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets.

Communications biology
Predicting prokaryotic phenotypes-observable traits that govern functionality, adaptability, and interactions-holds significant potential for fields such as biotechnology, environmental sciences, and evolutionary biology. In this study, we leverage m...